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  5. Pp3c7_22780V3.1

Pp3c7_22780V3.1


Description : No annotation


Gene families : OG_01_0000225 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000225_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_22780V3.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Pp3c11_8630V3.1 No alias No annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_9470V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_28150V3.1 No alias No annotation 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_17170V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c27_3880V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_17790V3.1 No alias No annotation 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_22840V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_31120V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_3950V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_10570V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15820V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_2630V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_1100V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002492 Transposase_Tc1-like 64 119
IPR038717 Tc1-like_DDE_dom 130 281
No external refs found!