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  5. Pp3c7_8070V3.1

Pp3c7_8070V3.1


Description : ubiquitin-protein ligase 1


Gene families : OG_01_0001504 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c7_8070V3.1
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AT1G55860 No alias ubiquitin-protein ligase 1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G70320 No alias ubiquitin-protein ligase 2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g012450 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!