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AT2G29580


Description : CCCH-type zinc fingerfamily protein with RNA-binding domain


Gene families : OG_01_0004761 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G29580
Cluster HCCA: Cluster_119


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004607 phosphatidylcholine-sterol O-acyltransferase activity IEP HCCA
MF GO:0004725 protein tyrosine phosphatase activity IEP HCCA
CC GO:0005677 chromatin silencing complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006706 steroid catabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009913 epidermal cell differentiation IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
MF GO:0010385 double-stranded methylated DNA binding IEP HCCA
BP GO:0015865 purine nucleotide transport IEP HCCA
BP GO:0015867 ATP transport IEP HCCA
BP GO:0015868 purine ribonucleotide transport IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016127 sterol catabolic process IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030307 positive regulation of cell growth IEP HCCA
BP GO:0030855 epithelial cell differentiation IEP HCCA
MF GO:0030946 protein tyrosine phosphatase activity, metal-dependent IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034433 steroid esterification IEP HCCA
BP GO:0034434 sterol esterification IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042273 ribosomal large subunit biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051446 positive regulation of meiotic cell cycle IEP HCCA
BP GO:0051503 adenine nucleotide transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
MF GO:0080095 phosphatidylethanolamine-sterol O-acyltransferase activity IEP HCCA
MF GO:0080096 phosphatidate-sterol O-acyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 230 294
IPR032297 Torus 156 194
PLAZA 3.0 Dicots AT2G29580