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AT1G09820


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0000698 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09820
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G09680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G06400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000913 preprophase band assembly IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP HCCA
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006481 C-terminal protein methylation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
CC GO:0010008 endosome membrane IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010076 maintenance of floral meristem identity IEP HCCA
BP GO:0010077 maintenance of inflorescence meristem identity IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0018410 C-terminal protein amino acid modification IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
CC GO:0030863 cortical cytoskeleton IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
CC GO:0030904 retromer complex IEP HCCA
CC GO:0030981 cortical microtubule cytoskeleton IEP HCCA
CC GO:0031519 PcG protein complex IEP HCCA
CC GO:0031902 late endosome membrane IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032585 multivesicular body membrane IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
CC GO:0035102 PRC1 complex IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP HCCA
MF GO:0052381 tRNA dimethylallyltransferase activity IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:1901420 negative regulation of response to alcohol IEP HCCA
BP GO:1905958 negative regulation of cellular response to alcohol IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 434 482
IPR002885 Pentatricopeptide_repeat 540 582
IPR002885 Pentatricopeptide_repeat 329 378
IPR002885 Pentatricopeptide_repeat 221 270
IPR002885 Pentatricopeptide_repeat 499 532
IPR002885 Pentatricopeptide_repeat 396 428
PLAZA 3.0 Dicots AT1G09820