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  5. Pp3c8_24770V3.1

Pp3c8_24770V3.1


Description : proteasome alpha subunit A1


Gene families : OG_01_0003341 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_24770V3.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT5G35590 No alias proteasome alpha subunit A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g705400 No alias Protein degradation.26S proteasome.20S core... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g08330.1 No alias component alpha type-1 of 26S proteasome 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 35 220
IPR000426 Proteasome_asu_N 9 31
No external refs found!