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  5. Pp3c8_7200V3.1

Pp3c8_7200V3.1


Description : chloroplast signal recognition particle 54 kDa subunit


Gene families : OG_01_0007357 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007357_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_7200V3.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT5G03940 No alias chloroplast signal recognition particle 54 kDa subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre11.g479750 No alias Protein translocation.chloroplast.thylakoid membrane SRP... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g05670.1 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12977.1 No alias component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!