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  5. Pp3c9_12661V3.1

Pp3c9_12661V3.1


Description : nuclear RNA polymerase A1


Gene families : OG_01_0000747 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_12661V3.1
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11520V3.1 No alias nuclear RNA polymerase A1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_17080V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12280V3.1 No alias nuclear RNA polymerase C1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_15150V3.1 No alias nuclear RNA polymerase A1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_30110V3.1 No alias No annotation 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_29710V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_35870V3.1 No alias nuclear RNA polymerase C1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14790V3.1 No alias nuclear RNA polymerase C1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17770V3.1 No alias nuclear RNA polymerase C1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17780V3.1 No alias nuclear RNA polymerase C1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006811 ion transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 20 343
No external refs found!