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  5. Pp3c9_17770V3.1

Pp3c9_17770V3.1


Description : nuclear RNA polymerase C1


Gene families : OG_01_0000747 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_17770V3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11520V3.1 No alias nuclear RNA polymerase A1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_17080V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_12280V3.1 No alias nuclear RNA polymerase C1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_15150V3.1 No alias nuclear RNA polymerase A1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_30110V3.1 No alias No annotation 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_29710V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_35870V3.1 No alias nuclear RNA polymerase C1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_14790V3.1 No alias nuclear RNA polymerase C1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_18590V3.1 No alias nuclear RNA polymerase C1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12661V3.1 No alias nuclear RNA polymerase A1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12700V3.1 No alias nuclear RNA polymerase A1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12713V3.1 No alias nuclear RNA polymerase A1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 60 324
No external refs found!