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  5. Pp3s67_110V3.1

Pp3s67_110V3.1


Description : RNA polymerase II large subunit


Gene families : OG_01_0000079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3s67_110V3.1
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11550V3.1 No alias uracil dna glycosylase 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_231V3.1 No alias nuclear RNA polymerase D1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3990V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19420V3.1 No alias nuclear RNA polymerase A1 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_19430V3.1 No alias uracil dna glycosylase 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_10730V3.1 No alias uracil dna glycosylase 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_12590V3.1 No alias uracil dna glycosylase 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_11510V3.1 No alias No annotation 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_270V3.1 No alias RNA polymerase II large subunit 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_280V3.1 No alias uracil dna glycosylase 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_1950V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24930V3.1 No alias uracil dna glycosylase 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_1410V3.1 No alias RNA polymerase II large subunit 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15700V3.1 No alias nuclear RNA polymerase C1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15710V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_4630V3.1 No alias uracil dna glycosylase 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12680V3.1 No alias RNA polymerase II large subunit 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_17820V3.1 No alias uracil dna glycosylase 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 146 216
IPR007083 RNA_pol_Rpb1_4 300 355
IPR007081 RNA_pol_Rpb1_5 355 415
No external refs found!