Coexpression cluster: Cluster_49 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0022402 cell cycle process 18.18% (12/66) 3.21 0.0 3e-06
GO:0006260 DNA replication 13.64% (9/66) 3.86 0.0 3e-06
GO:0006261 DNA-dependent DNA replication 12.12% (8/66) 4.03 0.0 6e-06
GO:0090304 nucleic acid metabolic process 27.27% (18/66) 2.03 0.0 2.7e-05
GO:0018205 peptidyl-lysine modification 12.12% (8/66) 3.3 2e-06 0.000162
GO:0140640 catalytic activity, acting on a nucleic acid 12.12% (8/66) 3.16 3e-06 0.000278
GO:0051567 histone H3-K9 methylation 9.09% (6/66) 3.81 4e-06 0.000297
GO:0061647 histone H3-K9 modification 9.09% (6/66) 3.81 4e-06 0.000297
GO:0018193 peptidyl-amino acid modification 12.12% (8/66) 3.06 5e-06 0.000297
GO:0006259 DNA metabolic process 13.64% (9/66) 2.76 7e-06 0.000364
GO:0006139 nucleobase-containing compound metabolic process 27.27% (18/66) 1.65 9e-06 0.000417
GO:0043227 membrane-bounded organelle 84.85% (56/66) 0.5 1.2e-05 0.000479
GO:0006346 DNA methylation-dependent heterochromatin assembly 7.58% (5/66) 4.06 1.3e-05 0.000494
GO:0043231 intracellular membrane-bounded organelle 84.85% (56/66) 0.5 1.2e-05 0.000512
GO:0018022 peptidyl-lysine methylation 9.09% (6/66) 3.44 1.9e-05 0.00052
GO:0034968 histone lysine methylation 9.09% (6/66) 3.44 1.9e-05 0.000534
GO:0043170 macromolecule metabolic process 37.88% (25/66) 1.21 2.3e-05 0.000553
GO:0046483 heterocycle metabolic process 28.79% (19/66) 1.51 1.9e-05 0.000555
GO:0006310 DNA recombination 9.09% (6/66) 3.41 2.2e-05 0.000558
GO:0043226 organelle 84.85% (56/66) 0.48 1.9e-05 0.000581
GO:1903046 meiotic cell cycle process 9.09% (6/66) 3.37 2.5e-05 0.000586
GO:0043229 intracellular organelle 84.85% (56/66) 0.48 1.8e-05 0.000609
GO:0051276 chromosome organization 9.09% (6/66) 3.47 1.7e-05 0.000613
GO:0044260 cellular macromolecule metabolic process 31.82% (21/66) 1.35 3.1e-05 0.000682
GO:0019948 SUMO activating enzyme activity 3.03% (2/66) 7.71 3.4e-05 0.000688
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 4.55% (3/66) 5.6 3.2e-05 0.000692
GO:0005634 nucleus 57.58% (38/66) 0.78 5.2e-05 0.001019
GO:0051726 regulation of cell cycle 9.09% (6/66) 3.11 6.9e-05 0.00105
GO:0042138 meiotic DNA double-strand break formation 6.06% (4/66) 4.2 6.8e-05 0.00106
GO:0045814 negative regulation of gene expression, epigenetic 7.58% (5/66) 3.57 6.6e-05 0.001068
GO:0006479 protein methylation 9.09% (6/66) 3.13 6.5e-05 0.001085
GO:0008213 protein alkylation 9.09% (6/66) 3.13 6.5e-05 0.001085
GO:0016571 histone methylation 9.09% (6/66) 3.14 6.1e-05 0.001092
GO:0070828 heterochromatin organization 7.58% (5/66) 3.59 6.1e-05 0.001121
GO:0031507 heterochromatin assembly 7.58% (5/66) 3.6 5.9e-05 0.00113
GO:0000911 cytokinesis by cell plate formation 7.58% (5/66) 3.49 8.6e-05 0.001269
GO:0006396 RNA processing 13.64% (9/66) 2.27 9.6e-05 0.001343
GO:0000910 cytokinesis 7.58% (5/66) 3.46 9.5e-05 0.001364
GO:0061982 meiosis I cell cycle process 6.06% (4/66) 4.04 0.000105 0.001441
GO:0006302 double-strand break repair 6.06% (4/66) 4.01 0.000114 0.001515
GO:0040029 regulation of gene expression, epigenetic 7.58% (5/66) 3.38 0.00012 0.001564
GO:0140097 catalytic activity, acting on DNA 6.06% (4/66) 3.94 0.000136 0.001615
GO:0098813 nuclear chromosome segregation 6.06% (4/66) 3.94 0.000136 0.001615
GO:0045132 meiotic chromosome segregation 6.06% (4/66) 3.96 0.000132 0.001631
GO:0008094 ATP-dependent activity, acting on DNA 4.55% (3/66) 4.94 0.00013 0.001646
GO:0034641 cellular nitrogen compound metabolic process 27.27% (18/66) 1.35 0.000144 0.001669
GO:1901360 organic cyclic compound metabolic process 28.79% (19/66) 1.28 0.000158 0.001791
GO:0031048 heterochromatin assembly by small RNA 6.06% (4/66) 3.87 0.000168 0.001861
GO:0016570 histone modification 9.09% (6/66) 2.84 0.000192 0.002085
GO:0090305 nucleic acid phosphodiester bond hydrolysis 6.06% (4/66) 3.8 0.000197 0.002104
GO:0034645 cellular macromolecule biosynthetic process 16.67% (11/66) 1.85 0.000206 0.002158
GO:0006725 cellular aromatic compound metabolic process 27.27% (18/66) 1.28 0.000257 0.002533
GO:0033044 regulation of chromosome organization 6.06% (4/66) 3.71 0.000253 0.002542
GO:0007059 chromosome segregation 6.06% (4/66) 3.71 0.000253 0.002542
GO:0140527 reciprocal homologous recombination 6.06% (4/66) 3.62 0.000318 0.003031
GO:0007131 reciprocal meiotic recombination 6.06% (4/66) 3.62 0.000318 0.003031
GO:0099512 supramolecular fiber 4.55% (3/66) 4.46 0.000346 0.003077
GO:0099081 supramolecular polymer 4.55% (3/66) 4.46 0.000346 0.003077
GO:0099513 polymeric cytoskeletal fiber 4.55% (3/66) 4.46 0.000346 0.003077
GO:0007062 sister chromatid cohesion 6.06% (4/66) 3.57 0.000365 0.00309
GO:0010629 negative regulation of gene expression 9.09% (6/66) 2.67 0.000356 0.003109
GO:0008641 ubiquitin-like modifier activating enzyme activity 3.03% (2/66) 6.13 0.000365 0.003134
GO:0035825 homologous recombination 6.06% (4/66) 3.6 0.000337 0.003147
GO:0006325 chromatin organization 7.58% (5/66) 3.01 0.000396 0.003295
GO:0006270 DNA replication initiation 4.55% (3/66) 4.27 0.00051 0.004183
GO:0051026 chiasma assembly 3.03% (2/66) 5.8 0.000577 0.004662
GO:0000278 mitotic cell cycle 6.06% (4/66) 3.37 0.000616 0.004832
GO:0009059 macromolecule biosynthetic process 16.67% (11/66) 1.66 0.000616 0.004902
GO:0010605 negative regulation of macromolecule metabolic process 10.61% (7/66) 2.26 0.000638 0.004928
GO:0006974 cellular response to DNA damage stimulus 7.58% (5/66) 2.83 0.000701 0.005339
GO:0099080 supramolecular complex 4.55% (3/66) 4.11 0.000717 0.00538
GO:0033043 regulation of organelle organization 6.06% (4/66) 3.3 0.000738 0.005465
GO:0036211 protein modification process 16.67% (11/66) 1.62 0.000784 0.005571
GO:0006464 cellular protein modification process 16.67% (11/66) 1.62 0.000784 0.005571
GO:0010332 response to gamma radiation 4.55% (3/66) 4.07 0.000775 0.005661
GO:0016925 protein sumoylation 3.03% (2/66) 5.54 0.000837 0.005796
GO:0009892 negative regulation of metabolic process 10.61% (7/66) 2.19 0.000837 0.005867
GO:0035194 post-transcriptional gene silencing by RNA 4.55% (3/66) 4.01 0.000869 0.005939
GO:0043414 macromolecule methylation 9.09% (6/66) 2.32 0.001295 0.008629
GO:0032259 methylation 9.09% (6/66) 2.32 0.001295 0.008629
GO:0016043 cellular component organization 21.21% (14/66) 1.29 0.001354 0.008907
GO:0010212 response to ionizing radiation 4.55% (3/66) 3.76 0.001445 0.009394
GO:0016070 RNA metabolic process 15.15% (10/66) 1.6 0.00156 0.010016
GO:0044237 cellular metabolic process 42.42% (28/66) 0.75 0.001758 0.011156
GO:0007049 cell cycle 6.06% (4/66) 2.94 0.001878 0.011779
GO:0140098 catalytic activity, acting on RNA 6.06% (4/66) 2.88 0.002174 0.013475
GO:0004016 adenylate cyclase activity 1.52% (1/66) 8.71 0.002387 0.014621
GO:0000226 microtubule cytoskeleton organization 6.06% (4/66) 2.8 0.002616 0.015848
GO:0006807 nitrogen compound metabolic process 33.33% (22/66) 0.85 0.002793 0.016728
GO:0006281 DNA repair 6.06% (4/66) 2.75 0.002986 0.017685
GO:0071840 cellular component organization or biogenesis 21.21% (14/66) 1.17 0.00305 0.017867
GO:0009855 determination of bilateral symmetry 4.55% (3/66) 3.37 0.00313 0.018136
GO:0009799 specification of symmetry 4.55% (3/66) 3.35 0.003203 0.018359
GO:0006996 organelle organization 13.64% (9/66) 1.56 0.003261 0.01849
GO:0071704 organic substance metabolic process 42.42% (28/66) 0.69 0.003359 0.018847
GO:0007017 microtubule-based process 6.06% (4/66) 2.69 0.003438 0.018888
GO:0006397 mRNA processing 4.55% (3/66) 3.32 0.003428 0.019033
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4.55% (3/66) 3.3 0.003583 0.019488
GO:0043412 macromolecule modification 16.67% (11/66) 1.32 0.004001 0.021324
GO:0060255 regulation of macromolecule metabolic process 19.7% (13/66) 1.18 0.003966 0.021351
GO:0051128 regulation of cellular component organization 6.06% (4/66) 2.62 0.004144 0.02187
GO:0008380 RNA splicing 6.06% (4/66) 2.61 0.004198 0.021937
GO:0061695 transferase complex, transferring phosphorus-containing groups 3.03% (2/66) 4.32 0.004541 0.023501
GO:0030422 production of siRNA involved in RNA interference 4.55% (3/66) 3.17 0.004603 0.023593
GO:0016779 nucleotidyltransferase activity 4.55% (3/66) 3.15 0.004789 0.023855
GO:0031050 dsRNA processing 4.55% (3/66) 3.14 0.004883 0.023879
GO:0070918 production of small RNA involved in gene silencing by RNA 4.55% (3/66) 3.14 0.004883 0.023879
GO:0008622 epsilon DNA polymerase complex 1.52% (1/66) 7.71 0.004767 0.023972
GO:0045143 homologous chromosome segregation 1.52% (1/66) 7.71 0.004767 0.023972
GO:0044267 cellular protein metabolic process 16.67% (11/66) 1.28 0.004991 0.024182
GO:0016877 ligase activity, forming carbon-sulfur bonds 3.03% (2/66) 4.22 0.005198 0.024959
GO:0008152 metabolic process 43.94% (29/66) 0.62 0.005456 0.025737
GO:0051225 spindle assembly 3.03% (2/66) 4.19 0.005426 0.025821
GO:0005874 microtubule 3.03% (2/66) 4.16 0.005658 0.026455
GO:0007051 spindle organization 3.03% (2/66) 4.13 0.005895 0.027088
GO:0140694 non-membrane-bounded organelle assembly 3.03% (2/66) 4.13 0.005895 0.027088
GO:0016441 posttranscriptional gene silencing 4.55% (3/66) 3.03 0.005996 0.027315
GO:0070925 organelle assembly 3.03% (2/66) 4.1 0.006137 0.027719
GO:0031047 gene silencing by RNA 4.55% (3/66) 2.97 0.006662 0.029837
GO:0008283 cell population proliferation 4.55% (3/66) 2.96 0.006777 0.0301
GO:0043247 telomere maintenance in response to DNA damage 3.03% (2/66) 4.01 0.006888 0.03034
GO:0003896 DNA primase activity 1.52% (1/66) 7.13 0.007143 0.031206
GO:0032204 regulation of telomere maintenance 3.03% (2/66) 3.96 0.00741 0.032112
GO:0006305 DNA alkylation 4.55% (3/66) 2.88 0.007993 0.03381
GO:0010014 meristem initiation 4.55% (3/66) 2.88 0.007993 0.03381
GO:0006306 DNA methylation 4.55% (3/66) 2.88 0.007993 0.03381
GO:0044728 DNA methylation or demethylation 4.55% (3/66) 2.86 0.00825 0.034088
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.03% (2/66) 3.88 0.008227 0.034258
GO:0006312 mitotic recombination 3.03% (2/66) 3.88 0.008227 0.034258
GO:0006304 DNA modification 4.55% (3/66) 2.85 0.008381 0.034361
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 1.52% (1/66) 6.71 0.009513 0.038704
GO:0000723 telomere maintenance 3.03% (2/66) 3.76 0.009673 0.038766
GO:0032200 telomere organization 3.03% (2/66) 3.76 0.009673 0.038766
GO:0000280 nuclear division 3.03% (2/66) 3.73 0.009975 0.039094
GO:0034062 5'-3' RNA polymerase activity 3.03% (2/66) 3.73 0.009975 0.039094
GO:0097747 RNA polymerase activity 3.03% (2/66) 3.73 0.009975 0.039094
GO:0050789 regulation of biological process 28.79% (19/66) 0.78 0.010146 0.039474
GO:0140513 nuclear protein-containing complex 4.55% (3/66) 2.74 0.010338 0.039929
GO:0007010 cytoskeleton organization 6.06% (4/66) 2.2 0.011319 0.043403
GO:0019222 regulation of metabolic process 19.7% (13/66) 1.0 0.011445 0.043574
GO:0016246 RNA interference 3.03% (2/66) 3.62 0.011547 0.043648
GO:0005849 mRNA cleavage factor complex 1.52% (1/66) 6.39 0.011877 0.043657
GO:0007143 female meiotic nuclear division 1.52% (1/66) 6.39 0.011877 0.043657
GO:0042575 DNA polymerase complex 1.52% (1/66) 6.39 0.011877 0.043657
GO:0010073 meristem maintenance 3.03% (2/66) 3.6 0.011873 0.044567
GO:0004540 ribonuclease activity 3.03% (2/66) 3.52 0.01322 0.048261
GO:0051189 prosthetic group metabolic process 1.52% (1/66) 6.13 0.014235 0.048328
GO:0019720 Mo-molybdopterin cofactor metabolic process 1.52% (1/66) 6.13 0.014235 0.048328
GO:0016849 phosphorus-oxygen lyase activity 1.52% (1/66) 6.13 0.014235 0.048328
GO:0006378 mRNA polyadenylation 1.52% (1/66) 6.13 0.014235 0.048328
GO:0004526 ribonuclease P activity 1.52% (1/66) 6.13 0.014235 0.048328
GO:0031124 mRNA 3'-end processing 1.52% (1/66) 6.13 0.014235 0.048328
GO:0048766 root hair initiation 1.52% (1/66) 6.13 0.014235 0.048328
GO:0043545 molybdopterin cofactor metabolic process 1.52% (1/66) 6.13 0.014235 0.048328
GO:0006777 Mo-molybdopterin cofactor biosynthetic process 1.52% (1/66) 6.13 0.014235 0.048328
GO:0140657 ATP-dependent activity 6.06% (4/66) 2.12 0.013538 0.049087
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_24 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_39 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_54 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_84 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_109 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_115 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_167 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_211 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_214 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_232 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_233 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_248 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_268 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_6 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_137 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_6 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_20 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_79 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_108 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_135 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_154 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_46 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_84 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_169 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_207 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_211 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_299 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_3 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_131 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (66) (download table)

InterPro Domains

GO Terms

Family Terms