Coexpression cluster: Cluster_31 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006633 fatty acid biosynthetic process 9.17% (22/240) 4.12 0.0 0.0
GO:0016570 histone modification 10.83% (26/240) 3.09 0.0 0.0
GO:0006631 fatty acid metabolic process 10.83% (26/240) 2.86 0.0 0.0
GO:0016441 posttranscriptional gene silencing 6.67% (16/240) 3.58 0.0 0.0
GO:0031047 gene silencing by RNA 6.25% (15/240) 3.43 0.0 0.0
GO:0006479 protein methylation 7.92% (19/240) 2.93 0.0 0.0
GO:0008213 protein alkylation 7.92% (19/240) 2.93 0.0 0.0
GO:0016571 histone methylation 7.92% (19/240) 2.94 0.0 0.0
GO:0032259 methylation 10.0% (24/240) 2.45 0.0 0.0
GO:0043414 macromolecule methylation 10.0% (24/240) 2.45 0.0 0.0
GO:0018022 peptidyl-lysine methylation 7.08% (17/240) 3.08 0.0 0.0
GO:0030422 production of siRNA involved in RNA interference 5.83% (14/240) 3.53 0.0 0.0
GO:0031050 dsRNA processing 5.83% (14/240) 3.5 0.0 0.0
GO:0070918 production of small RNA involved in gene silencing by RNA 5.83% (14/240) 3.5 0.0 0.0
GO:0034968 histone lysine methylation 7.08% (17/240) 3.08 0.0 0.0
GO:0010629 negative regulation of gene expression 8.75% (21/240) 2.62 0.0 0.0
GO:0051567 histone H3-K9 methylation 6.25% (15/240) 3.27 0.0 0.0
GO:0061647 histone H3-K9 modification 6.25% (15/240) 3.27 0.0 0.0
GO:0051607 defense response to virus 5.83% (14/240) 3.42 0.0 0.0
GO:0140546 defense response to symbiont 5.83% (14/240) 3.42 0.0 0.0
GO:0009616 RNAi-mediated antiviral immune response 5.0% (12/240) 3.78 0.0 0.0
GO:0000036 acyl carrier activity 2.5% (6/240) 5.97 0.0 0.0
GO:0044620 ACP phosphopantetheine attachment site binding 2.5% (6/240) 5.97 0.0 0.0
GO:0051192 prosthetic group binding 2.5% (6/240) 5.97 0.0 0.0
GO:0140414 phosphopantetheine-dependent carrier activity 2.5% (6/240) 5.97 0.0 0.0
GO:0006084 acetyl-CoA metabolic process 4.58% (11/240) 3.9 0.0 0.0
GO:0072330 monocarboxylic acid biosynthetic process 10.0% (24/240) 2.3 0.0 0.0
GO:0010608 posttranscriptional regulation of gene expression 6.67% (16/240) 3.02 0.0 0.0
GO:0010267 production of ta-siRNAs involved in RNA interference 5.0% (12/240) 3.64 0.0 0.0
GO:0006305 DNA alkylation 5.83% (14/240) 3.24 0.0 0.0
GO:0006306 DNA methylation 5.83% (14/240) 3.24 0.0 0.0
GO:0006637 acyl-CoA metabolic process 4.58% (11/240) 3.83 0.0 0.0
GO:0035383 thioester metabolic process 4.58% (11/240) 3.83 0.0 0.0
GO:0044728 DNA methylation or demethylation 5.83% (14/240) 3.22 0.0 0.0
GO:0006304 DNA modification 5.83% (14/240) 3.21 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 12.5% (30/240) 1.93 0.0 0.0
GO:0033865 nucleoside bisphosphate metabolic process 4.58% (11/240) 3.75 0.0 0.0
GO:0033875 ribonucleoside bisphosphate metabolic process 4.58% (11/240) 3.75 0.0 0.0
GO:0034032 purine nucleoside bisphosphate metabolic process 4.58% (11/240) 3.75 0.0 0.0
GO:0009987 cellular process 55.83% (134/240) 0.61 0.0 0.0
GO:0009615 response to virus 5.83% (14/240) 3.16 0.0 0.0
GO:0016053 organic acid biosynthetic process 12.92% (31/240) 1.84 0.0 0.0
GO:0010605 negative regulation of macromolecule metabolic process 10.0% (24/240) 2.17 0.0 0.0
GO:0004312 fatty acid synthase activity 2.5% (6/240) 5.63 0.0 0.0
GO:0006346 DNA methylation-dependent heterochromatin assembly 5.0% (12/240) 3.46 0.0 0.0
GO:0000911 cytokinesis by cell plate formation 5.83% (14/240) 3.11 0.0 0.0
GO:0035196 production of miRNAs involved in gene silencing by miRNA 5.0% (12/240) 3.43 0.0 0.0
GO:0000910 cytokinesis 5.83% (14/240) 3.08 0.0 0.0
GO:0009892 negative regulation of metabolic process 10.0% (24/240) 2.11 0.0 0.0
GO:0040029 regulation of gene expression, epigenetic 5.83% (14/240) 3.0 0.0 0.0
GO:0000226 microtubule cytoskeleton organization 6.25% (15/240) 2.85 0.0 0.0
GO:0031507 heterochromatin assembly 5.42% (13/240) 3.11 0.0 0.0
GO:0070828 heterochromatin organization 5.42% (13/240) 3.11 0.0 0.0
GO:0051225 spindle assembly 3.33% (8/240) 4.32 0.0 0.0
GO:0045814 negative regulation of gene expression, epigenetic 5.42% (13/240) 3.08 0.0 0.0
GO:0140104 molecular carrier activity 2.5% (6/240) 5.26 0.0 0.0
GO:0007051 spindle organization 3.33% (8/240) 4.26 0.0 0.0
GO:0140694 non-membrane-bounded organelle assembly 3.33% (8/240) 4.26 0.0 0.0
GO:0018205 peptidyl-lysine modification 7.08% (17/240) 2.52 0.0 0.0
GO:0070925 organelle assembly 3.33% (8/240) 4.23 0.0 0.0
GO:0007017 microtubule-based process 6.25% (15/240) 2.74 0.0 0.0
GO:0009532 plastid stroma 9.17% (22/240) 2.11 0.0 0.0
GO:0009570 chloroplast stroma 9.17% (22/240) 2.11 0.0 0.0
GO:0022402 cell cycle process 8.75% (21/240) 2.15 0.0 0.0
GO:0032502 developmental process 25.83% (62/240) 1.04 0.0 0.0
GO:0071704 organic substance metabolic process 42.92% (103/240) 0.7 0.0 0.0
GO:0044283 small molecule biosynthetic process 13.75% (33/240) 1.58 0.0 0.0
GO:0044237 cellular metabolic process 41.67% (100/240) 0.72 0.0 0.0
GO:0035194 post-transcriptional gene silencing by RNA 3.75% (9/240) 3.73 0.0 1e-06
GO:0006464 cellular protein modification process 15.0% (36/240) 1.47 0.0 1e-06
GO:0036211 protein modification process 15.0% (36/240) 1.47 0.0 1e-06
GO:0051726 regulation of cell cycle 6.25% (15/240) 2.57 0.0 1e-06
GO:0016572 histone phosphorylation 3.33% (8/240) 3.89 0.0 1e-06
GO:0006325 chromatin organization 5.83% (14/240) 2.63 0.0 1e-06
GO:0043412 macromolecule modification 16.67% (40/240) 1.32 0.0 1e-06
GO:0065007 biological regulation 32.92% (79/240) 0.82 0.0 2e-06
GO:0018193 peptidyl-amino acid modification 7.08% (17/240) 2.29 0.0 2e-06
GO:0044238 primary metabolic process 37.92% (91/240) 0.73 0.0 2e-06
GO:0007010 cytoskeleton organization 6.67% (16/240) 2.34 0.0 3e-06
GO:0008152 metabolic process 44.17% (106/240) 0.63 0.0 3e-06
GO:0050793 regulation of developmental process 10.42% (25/240) 1.72 0.0 3e-06
GO:0007267 cell-cell signaling 3.75% (9/240) 3.3 0.0 6e-06
GO:0023052 signaling 3.75% (9/240) 3.29 0.0 6e-06
GO:1901564 organonitrogen compound metabolic process 26.67% (64/240) 0.89 0.0 6e-06
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 4.17% (10/240) 3.05 0.0 6e-06
GO:0045087 innate immune response 5.0% (12/240) 2.58 1e-06 1.6e-05
GO:0006790 sulfur compound metabolic process 8.75% (21/240) 1.78 1e-06 1.7e-05
GO:0050789 regulation of biological process 29.17% (70/240) 0.8 1e-06 1.7e-05
GO:0032787 monocarboxylic acid metabolic process 12.5% (30/240) 1.41 1e-06 1.7e-05
GO:0009941 chloroplast envelope 7.5% (18/240) 1.95 1e-06 1.8e-05
GO:0006082 organic acid metabolic process 15.83% (38/240) 1.21 1e-06 1.8e-05
GO:0006955 immune response 5.0% (12/240) 2.54 1e-06 1.9e-05
GO:0019752 carboxylic acid metabolic process 15.0% (36/240) 1.24 1e-06 1.9e-05
GO:0009526 plastid envelope 7.5% (18/240) 1.94 1e-06 2e-05
GO:0031967 organelle envelope 7.92% (19/240) 1.86 2e-06 2.2e-05
GO:0031975 envelope 7.92% (19/240) 1.86 2e-06 2.2e-05
GO:0008283 cell population proliferation 4.17% (10/240) 2.84 2e-06 2.2e-05
GO:0060255 regulation of macromolecule metabolic process 18.33% (44/240) 1.08 2e-06 2.3e-05
GO:0010050 vegetative phase change 2.92% (7/240) 3.61 2e-06 2.4e-05
GO:0043436 oxoacid metabolic process 15.42% (37/240) 1.2 2e-06 2.4e-05
GO:0016246 RNA interference 2.92% (7/240) 3.57 2e-06 2.8e-05
GO:0010073 meristem maintenance 2.92% (7/240) 3.55 2e-06 3.1e-05
GO:0008610 lipid biosynthetic process 10.83% (26/240) 1.49 2e-06 3.2e-05
GO:1901990 regulation of mitotic cell cycle phase transition 2.92% (7/240) 3.53 3e-06 3.4e-05
GO:0010075 regulation of meristem growth 4.17% (10/240) 2.75 3e-06 3.5e-05
GO:0006275 regulation of DNA replication 3.75% (9/240) 2.95 3e-06 3.5e-05
GO:0044255 cellular lipid metabolic process 11.25% (27/240) 1.43 3e-06 3.9e-05
GO:0007346 regulation of mitotic cell cycle 3.33% (8/240) 3.18 3e-06 3.9e-05
GO:0006260 DNA replication 5.0% (12/240) 2.41 3e-06 4e-05
GO:1901987 regulation of cell cycle phase transition 2.92% (7/240) 3.47 3e-06 4.2e-05
GO:0006139 nucleobase-containing compound metabolic process 17.92% (43/240) 1.05 4e-06 4.8e-05
GO:0048449 floral organ formation 3.75% (9/240) 2.89 4e-06 4.8e-05
GO:0009150 purine ribonucleotide metabolic process 5.42% (13/240) 2.24 5e-06 5.5e-05
GO:0006807 nitrogen compound metabolic process 30.42% (73/240) 0.72 5e-06 5.7e-05
GO:0072521 purine-containing compound metabolic process 5.83% (14/240) 2.12 5e-06 5.9e-05
GO:0031048 heterochromatin assembly by small RNA 3.33% (8/240) 3.0 8e-06 9e-05
GO:0016129 phytosteroid biosynthetic process 3.33% (8/240) 2.99 8e-06 9.3e-05
GO:0016132 brassinosteroid biosynthetic process 3.33% (8/240) 2.99 8e-06 9.3e-05
GO:0120178 steroid hormone biosynthetic process 3.33% (8/240) 2.99 8e-06 9.3e-05
GO:0044267 cellular protein metabolic process 15.0% (36/240) 1.13 8e-06 9.3e-05
GO:0006259 DNA metabolic process 7.08% (17/240) 1.81 8e-06 9.6e-05
GO:0019222 regulation of metabolic process 19.17% (46/240) 0.96 9e-06 9.7e-05
GO:0032501 multicellular organismal process 14.58% (35/240) 1.13 1e-05 0.000116
GO:0006629 lipid metabolic process 12.5% (30/240) 1.25 1.1e-05 0.000116
GO:0016128 phytosteroid metabolic process 3.33% (8/240) 2.93 1.1e-05 0.00012
GO:0016131 brassinosteroid metabolic process 3.33% (8/240) 2.93 1.1e-05 0.00012
GO:0048519 negative regulation of biological process 10.83% (26/240) 1.36 1.2e-05 0.000124
GO:0006163 purine nucleotide metabolic process 5.42% (13/240) 2.11 1.2e-05 0.000125
GO:0009855 determination of bilateral symmetry 3.33% (8/240) 2.92 1.2e-05 0.000125
GO:0009799 specification of symmetry 3.33% (8/240) 2.91 1.3e-05 0.000132
GO:0003989 acetyl-CoA carboxylase activity 1.25% (3/240) 5.85 1.3e-05 0.000132
GO:0110165 cellular anatomical entity 93.75% (225/240) 0.15 1.4e-05 0.000144
GO:0016126 sterol biosynthetic process 3.75% (9/240) 2.66 1.4e-05 0.000146
GO:0016746 acyltransferase activity 4.17% (10/240) 2.48 1.4e-05 0.000147
GO:0071840 cellular component organization or biogenesis 18.33% (44/240) 0.96 1.5e-05 0.000148
GO:0044281 small molecule metabolic process 18.33% (44/240) 0.95 1.6e-05 0.000163
GO:0016125 sterol metabolic process 3.75% (9/240) 2.6 2e-05 0.000195
GO:0043231 intracellular membrane-bounded organelle 72.92% (175/240) 0.28 2e-05 0.000195
GO:0010389 regulation of G2/M transition of mitotic cell cycle 2.5% (6/240) 3.43 2e-05 0.000196
GO:1902749 regulation of cell cycle G2/M phase transition 2.5% (6/240) 3.43 2e-05 0.000196
GO:0043227 membrane-bounded organelle 72.92% (175/240) 0.28 2.1e-05 0.0002
GO:0016043 cellular component organization 17.08% (41/240) 0.98 2.1e-05 0.000201
GO:0016421 CoA carboxylase activity 1.25% (3/240) 5.63 2.2e-05 0.000209
GO:0016885 ligase activity, forming carbon-carbon bonds 1.25% (3/240) 5.63 2.2e-05 0.000209
GO:0019207 kinase regulator activity 2.08% (5/240) 3.85 2.4e-05 0.000229
GO:0010468 regulation of gene expression 15.83% (38/240) 1.0 3.2e-05 0.000298
GO:0048638 regulation of developmental growth 4.58% (11/240) 2.19 3.3e-05 0.000311
GO:0046483 heterocycle metabolic process 18.75% (45/240) 0.89 3.5e-05 0.000324
GO:0010564 regulation of cell cycle process 3.33% (8/240) 2.69 3.7e-05 0.000342
GO:0005488 binding 32.08% (77/240) 0.6 4.5e-05 0.000406
GO:0043229 intracellular organelle 72.92% (175/240) 0.26 4.8e-05 0.000436
GO:0043226 organelle 72.92% (175/240) 0.26 4.9e-05 0.000446
GO:0006743 ubiquinone metabolic process 1.67% (4/240) 4.26 5.1e-05 0.000453
GO:0006744 ubiquinone biosynthetic process 1.67% (4/240) 4.26 5.1e-05 0.000453
GO:0009507 chloroplast 22.92% (55/240) 0.76 5.1e-05 0.000453
GO:1905393 plant organ formation 3.75% (9/240) 2.42 5.3e-05 0.000466
GO:0002376 immune system process 5.0% (12/240) 1.99 6e-05 0.000518
GO:0042335 cuticle development 2.08% (5/240) 3.59 6e-05 0.00052
GO:0034641 cellular nitrogen compound metabolic process 19.17% (46/240) 0.84 6.8e-05 0.00059
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0019171 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0061062 regulation of nematode larval development 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0006086 acetyl-CoA biosynthetic process from pyruvate 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0033597 mitotic checkpoint complex 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0009374 biotin binding 0.83% (2/240) 6.85 7.5e-05 0.000615
GO:0080188 gene silencing by RNA-directed DNA methylation 1.25% (3/240) 5.11 7.4e-05 0.00063
GO:0140458 pre-transcriptional gene silencing by RNA 1.25% (3/240) 5.11 7.4e-05 0.00063
GO:0048580 regulation of post-embryonic development 5.83% (14/240) 1.76 7.8e-05 0.000632
GO:0003006 developmental process involved in reproduction 13.75% (33/240) 1.03 7.8e-05 0.000633
GO:0040008 regulation of growth 4.58% (11/240) 2.06 7.9e-05 0.00064
GO:1901576 organic substance biosynthetic process 23.33% (56/240) 0.73 8.1e-05 0.000647
GO:0006261 DNA-dependent DNA replication 3.75% (9/240) 2.34 8.1e-05 0.000651
GO:0044260 cellular macromolecule metabolic process 21.25% (51/240) 0.77 8.5e-05 0.000675
GO:0009536 plastid 22.92% (55/240) 0.73 8.6e-05 0.000678
GO:2000026 regulation of multicellular organismal development 5.83% (14/240) 1.75 8.9e-05 0.000693
GO:0000038 very long-chain fatty acid metabolic process 2.08% (5/240) 3.44 9.6e-05 0.00075
GO:2000241 regulation of reproductive process 5.42% (13/240) 1.81 0.000104 0.000802
GO:0048856 anatomical structure development 13.33% (32/240) 1.02 0.000107 0.000824
GO:0006796 phosphate-containing compound metabolic process 12.5% (30/240) 1.06 0.000109 0.000834
GO:0006694 steroid biosynthetic process 3.75% (9/240) 2.26 0.000121 0.00092
GO:0010440 stomatal lineage progression 2.08% (5/240) 3.36 0.000126 0.000946
GO:0048366 leaf development 3.33% (8/240) 2.44 0.000125 0.000949
GO:0006793 phosphorus metabolic process 12.5% (30/240) 1.05 0.000138 0.001029
GO:0009259 ribonucleotide metabolic process 5.42% (13/240) 1.74 0.000159 0.001177
GO:0019693 ribose phosphate metabolic process 5.42% (13/240) 1.74 0.000159 0.001177
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity 1.67% (4/240) 3.85 0.000164 0.00121
GO:0009058 biosynthetic process 23.33% (56/240) 0.68 0.000184 0.001348
GO:0051239 regulation of multicellular organismal process 5.83% (14/240) 1.64 0.000195 0.001419
GO:0009117 nucleotide metabolic process 6.25% (15/240) 1.55 0.000215 0.00156
GO:0006768 biotin metabolic process 0.83% (2/240) 6.26 0.000224 0.001604
GO:0009102 biotin biosynthetic process 0.83% (2/240) 6.26 0.000224 0.001604
GO:0022414 reproductive process 15.0% (36/240) 0.89 0.000226 0.00161
GO:0005634 nucleus 44.58% (107/240) 0.41 0.000228 0.001612
GO:0006753 nucleoside phosphate metabolic process 6.25% (15/240) 1.55 0.000227 0.001612
GO:0043170 macromolecule metabolic process 25.42% (61/240) 0.63 0.000238 0.001668
GO:0055086 nucleobase-containing small molecule metabolic process 6.67% (16/240) 1.46 0.000265 0.00185
GO:0019538 protein metabolic process 16.67% (40/240) 0.82 0.000267 0.001856
GO:0008202 steroid metabolic process 3.75% (9/240) 2.1 0.000282 0.001951
GO:0044272 sulfur compound biosynthetic process 5.42% (13/240) 1.65 0.000292 0.001999
GO:0019887 protein kinase regulator activity 1.67% (4/240) 3.64 0.000292 0.002007
GO:0009909 regulation of flower development 4.58% (11/240) 1.83 0.000304 0.002072
GO:1901661 quinone metabolic process 1.67% (4/240) 3.6 0.000324 0.002173
GO:1901663 quinone biosynthetic process 1.67% (4/240) 3.6 0.000324 0.002173
GO:0006468 protein phosphorylation 5.42% (13/240) 1.64 0.000323 0.002187
GO:0033293 monocarboxylic acid binding 1.25% (3/240) 4.43 0.000332 0.00222
GO:0048646 anatomical structure formation involved in morphogenesis 4.17% (10/240) 1.92 0.000349 0.002319
GO:0042181 ketone biosynthetic process 1.67% (4/240) 3.56 0.000358 0.00237
GO:0043603 cellular amide metabolic process 5.42% (13/240) 1.61 0.000385 0.002531
GO:0048451 petal formation 2.08% (5/240) 3.0 0.000412 0.002683
GO:0048453 sepal formation 2.08% (5/240) 3.0 0.000412 0.002683
GO:0009106 lipoate metabolic process 1.67% (4/240) 3.49 0.000435 0.002825
GO:0048831 regulation of shoot system development 4.58% (11/240) 1.77 0.00044 0.002843
GO:0004148 dihydrolipoyl dehydrogenase activity 0.83% (2/240) 5.85 0.000445 0.002859
GO:0044249 cellular biosynthetic process 20.42% (49/240) 0.69 0.000466 0.002983
GO:0016569 obsolete covalent chromatin modification 1.25% (3/240) 4.19 0.000564 0.003594
GO:0048827 phyllome development 4.17% (10/240) 1.83 0.000573 0.003634
GO:1901360 organic cyclic compound metabolic process 19.17% (46/240) 0.7 0.000626 0.00395
GO:1902494 catalytic complex 5.42% (13/240) 1.52 0.000694 0.004355
GO:0006725 cellular aromatic compound metabolic process 18.33% (44/240) 0.71 0.000726 0.004536
GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity 0.83% (2/240) 5.53 0.000737 0.004546
GO:0016418 S-acetyltransferase activity 0.83% (2/240) 5.53 0.000737 0.004546
GO:0019842 vitamin binding 0.83% (2/240) 5.53 0.000737 0.004546
GO:0031406 carboxylic acid binding 1.25% (3/240) 4.04 0.000765 0.004674
GO:0010014 meristem initiation 2.92% (7/240) 2.24 0.000763 0.004684
GO:0007389 pattern specification process 4.17% (10/240) 1.77 0.000811 0.004933
GO:0006996 organelle organization 9.58% (23/240) 1.05 0.000821 0.004975
GO:0009825 multidimensional cell growth 2.08% (5/240) 2.78 0.000835 0.005034
GO:0005515 protein binding 13.33% (32/240) 0.84 0.000991 0.005952
GO:0016310 phosphorylation 6.25% (15/240) 1.33 0.001053 0.006294
GO:0004738 pyruvate dehydrogenase activity 0.83% (2/240) 5.26 0.001099 0.00646
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity 0.83% (2/240) 5.26 0.001099 0.00646
GO:0030523 dihydrolipoamide S-acyltransferase activity 0.83% (2/240) 5.26 0.001099 0.00646
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines 0.83% (2/240) 5.26 0.001099 0.00646
GO:0140513 nuclear protein-containing complex 2.92% (7/240) 2.1 0.001324 0.007746
GO:0006396 RNA processing 6.67% (16/240) 1.24 0.001399 0.008148
GO:0048285 organelle fission 2.08% (5/240) 2.6 0.001451 0.008415
GO:0016417 S-acyltransferase activity 0.83% (2/240) 5.04 0.00153 0.00884
GO:0016458 obsolete gene silencing 1.67% (4/240) 2.99 0.001626 0.009351
GO:0006766 vitamin metabolic process 2.08% (5/240) 2.56 0.001665 0.009537
GO:1990234 transferase complex 3.33% (8/240) 1.86 0.001773 0.010115
GO:0005575 cellular_component 94.58% (227/240) 0.09 0.001969 0.011187
GO:0042304 regulation of fatty acid biosynthetic process 0.83% (2/240) 4.85 0.002029 0.011478
GO:0000280 nuclear division 1.67% (4/240) 2.87 0.002207 0.012432
GO:0031326 regulation of cellular biosynthetic process 12.5% (30/240) 0.8 0.002229 0.012507
GO:0031226 intrinsic component of plasma membrane 2.08% (5/240) 2.42 0.002549 0.014242
GO:0000096 sulfur amino acid metabolic process 3.75% (9/240) 1.64 0.002595 0.014384
GO:0005677 chromatin silencing complex 0.83% (2/240) 4.68 0.002594 0.014434
GO:0007020 microtubule nucleation 1.67% (4/240) 2.8 0.002616 0.014443
GO:0016444 somatic cell DNA recombination 1.25% (3/240) 3.43 0.002659 0.014616
GO:0042446 hormone biosynthetic process 3.33% (8/240) 1.75 0.002831 0.015504
GO:0042023 DNA endoreduplication 2.08% (5/240) 2.38 0.00287 0.015653
GO:0046658 anchored component of plasma membrane 1.67% (4/240) 2.76 0.002917 0.015847
GO:0044786 cell cycle DNA replication 2.08% (5/240) 2.36 0.002983 0.016142
GO:2000112 regulation of cellular macromolecule biosynthetic process 12.08% (29/240) 0.78 0.003005 0.016194
GO:0010556 regulation of macromolecule biosynthetic process 12.08% (29/240) 0.78 0.003027 0.01625
GO:0007049 cell cycle 2.92% (7/240) 1.88 0.003128 0.01673
GO:0019217 regulation of fatty acid metabolic process 0.83% (2/240) 4.53 0.003224 0.017172
GO:0008652 cellular amino acid biosynthetic process 4.17% (10/240) 1.49 0.003329 0.017663
GO:0003677 DNA binding 9.17% (22/240) 0.91 0.003425 0.018101
GO:0008150 biological_process 82.08% (197/240) 0.14 0.003482 0.018336
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor 0.83% (2/240) 4.39 0.003918 0.020548
GO:0009653 anatomical structure morphogenesis 7.92% (19/240) 0.96 0.004538 0.02371
GO:0000418 RNA polymerase IV complex 0.83% (2/240) 4.26 0.004674 0.024147
GO:0006085 acetyl-CoA biosynthetic process 0.83% (2/240) 4.26 0.004674 0.024147
GO:0009956 radial pattern formation 0.83% (2/240) 4.26 0.004674 0.024147
GO:0009889 regulation of biosynthetic process 12.5% (30/240) 0.72 0.0048 0.024702
GO:0042546 cell wall biogenesis 2.5% (6/240) 1.94 0.004983 0.02555
GO:0006733 obsolete oxidoreduction coenzyme metabolic process 1.25% (3/240) 3.11 0.005033 0.025613
GO:0009108 obsolete coenzyme biosynthetic process 1.25% (3/240) 3.11 0.005033 0.025613
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 0.83% (2/240) 4.15 0.005493 0.027146
GO:0016783 sulfurtransferase activity 0.83% (2/240) 4.15 0.005493 0.027146
GO:0035384 thioester biosynthetic process 0.83% (2/240) 4.15 0.005493 0.027146
GO:0071616 acyl-CoA biosynthetic process 0.83% (2/240) 4.15 0.005493 0.027146
GO:0000287 magnesium ion binding 0.83% (2/240) 4.15 0.005493 0.027146
GO:0006349 regulation of gene expression by genetic imprinting 0.83% (2/240) 4.15 0.005493 0.027146
GO:0071514 genetic imprinting 0.83% (2/240) 4.15 0.005493 0.027146
GO:0090304 nucleic acid metabolic process 11.25% (27/240) 0.75 0.005563 0.027393
GO:0010016 shoot system morphogenesis 1.67% (4/240) 2.51 0.005461 0.027688
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.25% (3/240) 3.04 0.005774 0.028332
GO:0009832 plant-type cell wall biogenesis 2.08% (5/240) 2.12 0.006177 0.030201
GO:0006281 DNA repair 2.92% (7/240) 1.7 0.006261 0.030503
GO:0042445 hormone metabolic process 3.33% (8/240) 1.53 0.007107 0.034379
GO:0009069 serine family amino acid metabolic process 2.92% (7/240) 1.66 0.007098 0.034458
GO:0019216 regulation of lipid metabolic process 1.25% (3/240) 2.91 0.007444 0.035883
GO:0010817 regulation of hormone levels 4.17% (10/240) 1.32 0.00754 0.036217
GO:0005507 copper ion binding 2.5% (6/240) 1.81 0.007647 0.036605
GO:0007142 male meiosis II 0.42% (1/240) 6.85 0.008678 0.037957
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0010240 plastid pyruvate dehydrogenase complex 0.42% (1/240) 6.85 0.008678 0.037957
GO:0045254 pyruvate dehydrogenase complex 0.42% (1/240) 6.85 0.008678 0.037957
GO:0009899 ent-kaurene synthase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0005835 fatty acid synthase complex 0.42% (1/240) 6.85 0.008678 0.037957
GO:0016631 enoyl-[acyl-carrier-protein] reductase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0047450 crotonoyl-[acyl-carrier-protein] hydratase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0031936 obsolete negative regulation of chromatin silencing 0.42% (1/240) 6.85 0.008678 0.037957
GO:0009317 acetyl-CoA carboxylase complex 0.42% (1/240) 6.85 0.008678 0.037957
GO:0004076 biotin synthase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0010376 stomatal complex formation 0.42% (1/240) 6.85 0.008678 0.037957
GO:0000821 regulation of arginine metabolic process 0.42% (1/240) 6.85 0.008678 0.037957
GO:0010307 acetylglutamate kinase regulator activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0090368 regulation of ornithine metabolic process 0.42% (1/240) 6.85 0.008678 0.037957
GO:1900079 regulation of arginine biosynthetic process 0.42% (1/240) 6.85 0.008678 0.037957
GO:2000013 regulation of arginine biosynthetic process via ornithine 0.42% (1/240) 6.85 0.008678 0.037957
GO:0010081 regulation of inflorescence meristem growth 0.42% (1/240) 6.85 0.008678 0.037957
GO:0008710 8-amino-7-oxononanoate synthase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0010234 anther wall tapetum cell fate specification 0.42% (1/240) 6.85 0.008678 0.037957
GO:0047632 agmatine deiminase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0017057 6-phosphogluconolactonase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0046167 glycerol-3-phosphate biosynthetic process 0.42% (1/240) 6.85 0.008678 0.037957
GO:0042973 glucan endo-1,3-beta-D-glucosidase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0004848 ureidoglycolate hydrolase activity 0.42% (1/240) 6.85 0.008678 0.037957
GO:0035884 arabinan biosynthetic process 0.42% (1/240) 6.85 0.008678 0.037957
GO:0048869 cellular developmental process 5.42% (13/240) 1.09 0.008808 0.038401
GO:0009524 phragmoplast 1.25% (3/240) 2.82 0.008865 0.038526
GO:0031323 regulation of cellular metabolic process 12.92% (31/240) 0.63 0.0101 0.043757
GO:0003725 double-stranded RNA binding 0.83% (2/240) 3.68 0.010471 0.044937
GO:1901681 sulfur compound binding 0.83% (2/240) 3.68 0.010471 0.044937
GO:0006546 glycine catabolic process 1.25% (3/240) 2.73 0.010434 0.045059
GO:0009071 serine family amino acid catabolic process 1.25% (3/240) 2.68 0.011563 0.049469
GO:0007154 cell communication 4.17% (10/240) 1.22 0.011681 0.049816
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_5 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_7 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_13 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_14 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_15 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_18 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_19 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_23 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.043 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_26 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_27 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_30 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_36 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_38 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_44 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_50 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_54 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_57 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_58 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_72 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_73 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_79 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_84 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_85 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_86 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_87 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_96 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_100 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_101 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_108 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_110 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_115 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_116 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_128 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_130 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_143 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_150 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_157 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_167 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_168 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_169 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_184 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_187 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_188 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_190 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_196 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_212 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_218 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_220 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_222 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_223 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_228 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_229 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_257 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_264 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_268 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_103 0.035 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_20 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_29 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_54 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_55 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_77 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_84 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_88 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_129 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_130 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_7 0.039 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_39 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_52 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_54 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_86 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_93 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_130 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_168 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_201 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_224 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_255 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_301 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_66 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_123 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (240) (download table)

InterPro Domains

GO Terms

Family Terms