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  5. Zci_05427.1

Zci_05427.1


Description : component uL2 of LSU proteome component


Gene families : OG_01_0000901 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000901_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_05427.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT2G18020 No alias Ribosomal protein L2 family 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G36130 No alias Ribosomal protein L2 family 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g535851 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_10200V3.1 No alias Ribosomal protein L2 family 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_21760V3.1 No alias Ribosomal protein L2 family 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_23630V3.1 No alias Ribosomal protein L2 family 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_12690V3.1 No alias Ribosomal protein L2 family 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_12720V3.1 No alias Ribosomal protein L2 family 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
MF GO:0042301 phosphate ion binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 257
IPR022666 Rbsml_prot_L2_RNA-bd_dom 15 90
No external refs found!