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  5. Zci_05974.1

Zci_05974.1


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_05974.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT1G29910 No alias chlorophyll A/B binding protein 3 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29920 No alias chlorophyll A/B-binding protein 2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29930 No alias chlorophyll A/B binding protein 1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05070 No alias photosystem II light harvesting complex gene 2.2 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34420 No alias photosystem II light harvesting complex gene B1B2 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34430 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27690 No alias photosystem II light harvesting complex gene 2.3 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G54270 No alias light-harvesting chlorophyll B-binding protein 3 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g05890.1 No alias component LHCb1/2/3 of LHC-II complex 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06710.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06720.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06740.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s116_10V3.1 No alias photosystem II light harvesting complex gene 2.1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
BP GO:0019627 urea metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035550 urease complex IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043419 urea catabolic process IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043605 cellular amide catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 65 230
No external refs found!