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  5. Zci_06390.2

Zci_06390.2


Description : chromatin remodeling factor (ERCC6)


Gene families : OG_01_0002247 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002247_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_06390.2
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AT5G63950 No alias chromatin remodeling 24 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g29760.1 No alias chromatin remodeling factor (ERCC6) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_20620V3.1 No alias chromatin remodeling 24 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_11030V3.1 No alias chromatin remodeling 24 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032954 regulation of cytokinetic process IEP HCCA
BP GO:0032955 regulation of division septum assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901891 regulation of cell septum assembly IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 156 456
IPR001650 Helicase_C 508 620
No external refs found!