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  5. Zci_07409.1

Zci_07409.1


Description : SSU processome assembly factor (UTP1/PWP2)


Gene families : OG_01_0005366 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_07409.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AT1G15440 No alias periodic tryptophan protein 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g254150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_9990V3.1 No alias periodic tryptophan protein 2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030686 90S preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 239 272
IPR001680 WD40_repeat 655 683
IPR001680 WD40_repeat 519 555
IPR001680 WD40_repeat 604 641
IPR001680 WD40_repeat 482 513
IPR007148 SSU_processome_Utp12 884 990
No external refs found!