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  5. AT2G40210

AT2G40210


Description : AGAMOUS-like 48


Gene families : OG_01_0000321 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40210
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AT1G65300 No alias AGAMOUS-like 38 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65330 No alias MADS-box transcription factor family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G05860 No alias MADS-box transcription factor family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP HCCA
MF GO:0004156 dihydropteroate synthase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0010023 proanthocyanidin biosynthetic process IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
MF GO:0010279 indole-3-acetic acid amido synthetase activity IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0046653 tetrahydrofolate metabolic process IEP HCCA
BP GO:0046654 tetrahydrofolate biosynthetic process IEP HCCA
BP GO:0048317 seed morphogenesis IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0080113 regulation of seed growth IEP HCCA
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:2000014 regulation of endosperm development IEP HCCA
BP GO:2000029 regulation of proanthocyanidin biosynthetic process IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 51
PLAZA 3.0 Dicots AT2G40210