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  5. AT2G40770

AT2G40770


Description : zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding


Gene families : OG_01_0007003 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40770
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre13.g603400 No alias DNA repair protein RAD5B OS=Arabidopsis thaliana 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
MF GO:0004835 tubulin-tyrosine ligase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006011 UDP-glucose metabolic process IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
MF GO:0010428 methyl-CpNpG binding IEP HCCA
MF GO:0010429 methyl-CpNpN binding IEP HCCA
MF GO:0010491 UTP:arabinose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0031445 regulation of heterochromatin assembly IEP HCCA
BP GO:0031453 positive regulation of heterochromatin assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0033233 regulation of protein sumoylation IEP HCCA
BP GO:0033234 negative regulation of protein sumoylation IEP HCCA
BP GO:0033356 UDP-L-arabinose metabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
BP GO:0046398 UDP-glucuronate metabolic process IEP HCCA
MF GO:0047338 UTP:xylose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0047350 glucuronate-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
MF GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0052573 UDP-D-galactose metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0120261 regulation of heterochromatin organization IEP HCCA
BP GO:0120263 positive regulation of heterochromatin organization IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:1902275 regulation of chromatin organization IEP HCCA
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP HCCA
BP GO:1905269 positive regulation of chromatin organization IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 291 783
IPR001650 Helicase_C 1434 1557
PLAZA 3.0 Dicots AT2G40770