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  5. Zci_09675.1

Zci_09675.1


Description : RNA helicase (Prp2)


Gene families : OG_01_0005435 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_09675.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008643 carbohydrate transport IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015293 symporter activity IEP HCCA
MF GO:0015294 solute:cation symporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 758 888
IPR011709 DUF1605 1096 1171
IPR011545 DEAD/DEAH_box_helicase_dom 565 716
IPR003029 S1_domain 261 321
IPR007502 Helicase-assoc_dom 950 1038
No external refs found!