Coexpression cluster: Cluster_158 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 59.68% (37/62) 1.15 0.0 1.6e-05
GO:0005488 binding 41.94% (26/62) 1.44 1e-06 8.2e-05
GO:1901363 heterocyclic compound binding 29.03% (18/62) 1.64 9e-06 0.000447
GO:0097159 organic cyclic compound binding 29.03% (18/62) 1.64 9e-06 0.000447
GO:0009987 cellular process 33.87% (21/62) 1.51 5e-06 0.000478
GO:0030983 mismatched DNA binding 4.84% (3/62) 5.93 1.5e-05 0.000568
GO:0003676 nucleic acid binding 19.35% (12/62) 2.22 8e-06 0.000593
GO:0006139 nucleobase-containing compound metabolic process 14.52% (9/62) 2.62 1.4e-05 0.000596
GO:0006298 mismatch repair 4.84% (3/62) 5.84 1.8e-05 0.000611
GO:0046483 heterocycle metabolic process 14.52% (9/62) 2.48 3e-05 0.000834
GO:0006725 cellular aromatic compound metabolic process 14.52% (9/62) 2.49 2.8e-05 0.000851
GO:1901360 organic cyclic compound metabolic process 14.52% (9/62) 2.44 3.7e-05 0.000925
GO:0033554 cellular response to stress 6.45% (4/62) 4.18 7.1e-05 0.001074
GO:0051716 cellular response to stimulus 6.45% (4/62) 4.18 7.1e-05 0.001074
GO:0030554 adenyl nucleotide binding 17.74% (11/62) 2.03 6.7e-05 0.001121
GO:0006807 nitrogen compound metabolic process 24.19% (15/62) 1.65 5.6e-05 0.001136
GO:0005524 ATP binding 17.74% (11/62) 2.04 6e-05 0.001138
GO:0006974 cellular response to DNA damage stimulus 6.45% (4/62) 4.28 5.4e-05 0.001156
GO:0032559 adenyl ribonucleotide binding 17.74% (11/62) 2.03 6.5e-05 0.001163
GO:0008150 biological_process 37.1% (23/62) 1.2 5.2e-05 0.001218
GO:0044237 cellular metabolic process 24.19% (15/62) 1.58 9.6e-05 0.001322
GO:0043168 anion binding 19.35% (12/62) 1.85 9.5e-05 0.001371
GO:0044238 primary metabolic process 25.81% (16/62) 1.49 0.00011 0.001447
GO:0006950 response to stress 6.45% (4/62) 3.94 0.000136 0.001709
GO:0090304 nucleic acid metabolic process 11.29% (7/62) 2.58 0.00016 0.001938
GO:0036094 small molecule binding 19.35% (12/62) 1.76 0.000173 0.00194
GO:0017076 purine nucleotide binding 17.74% (11/62) 1.86 0.00019 0.001974
GO:0032555 purine ribonucleotide binding 17.74% (11/62) 1.86 0.000185 0.001991
GO:0035639 purine ribonucleoside triphosphate binding 17.74% (11/62) 1.87 0.000172 0.001997
GO:0032553 ribonucleotide binding 17.74% (11/62) 1.84 0.000205 0.002064
GO:0034641 cellular nitrogen compound metabolic process 14.52% (9/62) 2.09 0.000241 0.002273
GO:0043167 ion binding 22.58% (14/62) 1.53 0.00025 0.002291
GO:0097367 carbohydrate derivative binding 17.74% (11/62) 1.82 0.000237 0.002312
GO:0050896 response to stimulus 6.45% (4/62) 3.67 0.000274 0.002435
GO:0071704 organic substance metabolic process 25.81% (16/62) 1.37 0.000295 0.002541
GO:0008152 metabolic process 27.42% (17/62) 1.3 0.00031 0.002602
GO:0003677 DNA binding 9.68% (6/62) 2.64 0.000394 0.003212
GO:0003690 double-stranded DNA binding 4.84% (3/62) 4.35 0.000433 0.003441
GO:0000166 nucleotide binding 17.74% (11/62) 1.71 0.000457 0.003452
GO:1901265 nucleoside phosphate binding 17.74% (11/62) 1.71 0.000457 0.003452
GO:0005515 protein binding 16.13% (10/62) 1.79 0.000549 0.004046
GO:0016043 cellular component organization 6.45% (4/62) 3.37 0.000611 0.004293
GO:0048523 negative regulation of cellular process 3.23% (2/62) 5.76 0.000601 0.004322
GO:0006259 DNA metabolic process 6.45% (4/62) 3.35 0.000649 0.004451
GO:0006281 DNA repair 4.84% (3/62) 3.98 0.000918 0.006029
GO:0043170 macromolecule metabolic process 19.35% (12/62) 1.5 0.000899 0.006036
GO:0071840 cellular component organization or biogenesis 6.45% (4/62) 3.1 0.00123 0.007904
GO:0070646 protein modification by small protein removal 3.23% (2/62) 4.89 0.002063 0.012713
GO:0016579 protein deubiquitination 3.23% (2/62) 4.89 0.002063 0.012713
GO:1902767 isoprenoid biosynthetic process via mevalonate 1.61% (1/62) 8.35 0.003073 0.013647
GO:1905462 regulation of DNA duplex unwinding 1.61% (1/62) 8.35 0.003073 0.013647
GO:0045338 farnesyl diphosphate metabolic process 1.61% (1/62) 8.35 0.003073 0.013647
GO:0045337 farnesyl diphosphate biosynthetic process 1.61% (1/62) 8.35 0.003073 0.013647
GO:0035383 thioester metabolic process 1.61% (1/62) 8.35 0.003073 0.013647
GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway 1.61% (1/62) 8.35 0.003073 0.013647
GO:0042555 MCM complex 1.61% (1/62) 8.35 0.003073 0.013647
GO:1905774 regulation of DNA helicase activity 1.61% (1/62) 8.35 0.003073 0.013647
GO:0004421 hydroxymethylglutaryl-CoA synthase activity 1.61% (1/62) 8.35 0.003073 0.013647
GO:0051097 negative regulation of helicase activity 1.61% (1/62) 8.35 0.003073 0.013647
GO:0051095 regulation of helicase activity 1.61% (1/62) 8.35 0.003073 0.013647
GO:1905463 negative regulation of DNA duplex unwinding 1.61% (1/62) 8.35 0.003073 0.013647
GO:1905775 negative regulation of DNA helicase activity 1.61% (1/62) 8.35 0.003073 0.013647
GO:0006637 acyl-CoA metabolic process 1.61% (1/62) 8.35 0.003073 0.013647
GO:0031369 translation initiation factor binding 1.61% (1/62) 8.35 0.003073 0.013647
GO:0006084 acetyl-CoA metabolic process 1.61% (1/62) 8.35 0.003073 0.013647
GO:0008242 omega peptidase activity 3.23% (2/62) 4.54 0.003336 0.013991
GO:0019783 ubiquitin-like protein-specific protease activity 3.23% (2/62) 4.54 0.003336 0.013991
GO:0101005 deubiquitinase activity 3.23% (2/62) 4.54 0.003336 0.013991
GO:0004843 thiol-dependent deubiquitinase 3.23% (2/62) 4.54 0.003336 0.013991
GO:0048519 negative regulation of biological process 3.23% (2/62) 4.76 0.002455 0.014827
GO:0044260 cellular macromolecule metabolic process 14.52% (9/62) 1.6 0.002579 0.015274
GO:0003824 catalytic activity 29.03% (18/62) 0.97 0.00306 0.017773
GO:0140096 catalytic activity, acting on a protein 12.9% (8/62) 1.56 0.005365 0.022193
GO:0043086 negative regulation of catalytic activity 1.61% (1/62) 7.35 0.006136 0.022879
GO:0010639 negative regulation of organelle organization 1.61% (1/62) 7.35 0.006136 0.022879
GO:2001251 negative regulation of chromosome organization 1.61% (1/62) 7.35 0.006136 0.022879
GO:0051129 negative regulation of cellular component organization 1.61% (1/62) 7.35 0.006136 0.022879
GO:0030896 checkpoint clamp complex 1.61% (1/62) 7.35 0.006136 0.022879
GO:0044092 negative regulation of molecular function 1.61% (1/62) 7.35 0.006136 0.022879
GO:0051276 chromosome organization 3.23% (2/62) 4.14 0.005774 0.023248
GO:0034622 cellular protein-containing complex assembly 3.23% (2/62) 4.14 0.005774 0.023248
GO:0065003 protein-containing complex assembly 3.23% (2/62) 4.02 0.006722 0.024757
GO:0016740 transferase activity 14.52% (9/62) 1.36 0.007785 0.028327
GO:0043933 protein-containing complex subunit organization 3.23% (2/62) 3.89 0.008089 0.029081
GO:0033044 regulation of chromosome organization 1.61% (1/62) 6.76 0.009191 0.03154
GO:0042770 signal transduction in response to DNA damage 1.61% (1/62) 6.76 0.009191 0.03154
GO:0031570 DNA integrity checkpoint signaling 1.61% (1/62) 6.76 0.009191 0.03154
GO:0000077 DNA damage checkpoint signaling 1.61% (1/62) 6.76 0.009191 0.03154
GO:0019787 ubiquitin-like protein transferase activity 3.23% (2/62) 3.76 0.009569 0.032471
GO:0009150 purine ribonucleotide metabolic process 3.23% (2/62) 3.56 0.012426 0.033506
GO:0022607 cellular component assembly 3.23% (2/62) 3.56 0.012426 0.033506
GO:0009259 ribonucleotide metabolic process 3.23% (2/62) 3.56 0.012426 0.033506
GO:0070647 protein modification by small protein conjugation or removal 3.23% (2/62) 3.56 0.012426 0.033506
GO:0019693 ribose phosphate metabolic process 3.23% (2/62) 3.56 0.012426 0.033506
GO:0006996 organelle organization 3.23% (2/62) 3.54 0.012861 0.034372
GO:0009092 homoserine metabolic process 1.61% (1/62) 6.35 0.012236 0.034534
GO:0006376 mRNA splice site selection 1.61% (1/62) 6.35 0.012236 0.034534
GO:0005685 U1 snRNP 1.61% (1/62) 6.35 0.012236 0.034534
GO:0050667 homocysteine metabolic process 1.61% (1/62) 6.35 0.012236 0.034534
GO:0061630 ubiquitin protein ligase activity 1.61% (1/62) 6.35 0.012236 0.034534
GO:0019346 transsulfuration 1.61% (1/62) 6.35 0.012236 0.034534
GO:0000075 cell cycle checkpoint signaling 1.61% (1/62) 6.35 0.012236 0.034534
GO:0005852 eukaryotic translation initiation factor 3 complex 1.61% (1/62) 6.35 0.012236 0.034534
GO:1901988 negative regulation of cell cycle phase transition 1.61% (1/62) 6.35 0.012236 0.034534
GO:0010948 negative regulation of cell cycle process 1.61% (1/62) 6.35 0.012236 0.034534
GO:0016114 terpenoid biosynthetic process 1.61% (1/62) 6.35 0.012236 0.034534
GO:0003333 amino acid transmembrane transport 1.61% (1/62) 6.35 0.012236 0.034534
GO:0006721 terpenoid metabolic process 1.61% (1/62) 6.35 0.012236 0.034534
GO:0033043 regulation of organelle organization 1.61% (1/62) 6.35 0.012236 0.034534
GO:0006865 amino acid transport 1.61% (1/62) 6.35 0.012236 0.034534
GO:0045786 negative regulation of cell cycle 1.61% (1/62) 6.35 0.012236 0.034534
GO:0072521 purine-containing compound metabolic process 3.23% (2/62) 3.51 0.013302 0.034933
GO:0006163 purine nucleotide metabolic process 3.23% (2/62) 3.51 0.013302 0.034933
GO:0006790 sulfur compound metabolic process 3.23% (2/62) 3.65 0.011161 0.037451
GO:0140513 nuclear protein-containing complex 3.23% (2/62) 3.44 0.014666 0.038183
GO:0061659 ubiquitin-like protein ligase activity 1.61% (1/62) 6.02 0.015271 0.039419
GO:0008233 peptidase activity 6.45% (4/62) 2.17 0.012141 0.040293
GO:1905039 carboxylic acid transmembrane transport 1.61% (1/62) 5.76 0.018298 0.042837
GO:0022618 ribonucleoprotein complex assembly 1.61% (1/62) 5.76 0.018298 0.042837
GO:0071826 ribonucleoprotein complex subunit organization 1.61% (1/62) 5.76 0.018298 0.042837
GO:0006270 DNA replication initiation 1.61% (1/62) 5.76 0.018298 0.042837
GO:0003872 6-phosphofructokinase activity 1.61% (1/62) 5.76 0.018298 0.042837
GO:1903825 organic acid transmembrane transport 1.61% (1/62) 5.76 0.018298 0.042837
GO:0120114 Sm-like protein family complex 1.61% (1/62) 5.76 0.018298 0.042837
GO:0097525 spliceosomal snRNP complex 1.61% (1/62) 5.76 0.018298 0.042837
GO:1901987 regulation of cell cycle phase transition 1.61% (1/62) 5.76 0.018298 0.042837
GO:0030532 small nuclear ribonucleoprotein complex 1.61% (1/62) 5.76 0.018298 0.042837
GO:0006753 nucleoside phosphate metabolic process 3.23% (2/62) 3.24 0.019099 0.044369
GO:0032991 protein-containing complex 6.45% (4/62) 2.01 0.017558 0.044935
GO:0009117 nucleotide metabolic process 3.23% (2/62) 3.28 0.018071 0.04586
GO:0051128 regulation of cellular component organization 1.61% (1/62) 5.54 0.021316 0.045981
GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer 1.61% (1/62) 5.54 0.021316 0.045981
GO:0032508 DNA duplex unwinding 1.61% (1/62) 5.54 0.021316 0.045981
GO:0032392 DNA geometric change 1.61% (1/62) 5.54 0.021316 0.045981
GO:0008443 phosphofructokinase activity 1.61% (1/62) 5.54 0.021316 0.045981
GO:0065004 protein-DNA complex assembly 1.61% (1/62) 5.54 0.021316 0.045981
GO:0003729 mRNA binding 1.61% (1/62) 5.54 0.021316 0.045981
GO:0006334 nucleosome assembly 1.61% (1/62) 5.54 0.021316 0.045981
GO:0019200 carbohydrate kinase activity 1.61% (1/62) 5.54 0.021316 0.045981
GO:0015849 organic acid transport 1.61% (1/62) 5.54 0.021316 0.045981
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_1 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_23 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_168 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_169 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_179 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_223 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_228 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_233 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_258 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_277 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_116 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_128 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_175 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_63 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_78 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_151 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_158 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_167 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_169 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_171 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_92 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_122 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_160 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_233 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_244 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_262 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_277 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_288 0.035 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_304 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (62) (download table)

InterPro Domains

GO Terms

Family Terms