AT2G42620

Description : RNI-like superfamily protein

Gene families : OG_01_0008553 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008553_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42620
Cluster	HCCA: Cluster_193

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp1g02580.1	No alias	MAX2 strigolactone signal transducer	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IPI	Interproscan
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007568	aging	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009414	response to water deprivation	IGI	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009416	response to light stimulus	IMP	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	IMP	Interproscan
BP	GO:0009934	regulation of meristem structural organization	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010016	shoot system morphogenesis	IMP	Interproscan
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010050	vegetative phase change	RCA	Interproscan
BP	GO:0010187	negative regulation of seed germination	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016567	protein ubiquitination	TAS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	ISS	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042335	cuticle development	IMP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902584	positive regulation of response to water deprivation	IMP	Interproscan
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000070	regulation of response to water deprivation	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	HCCA
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0008272	sulfate transport	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009292	genetic transfer	IEP	HCCA
BP	GO:0009294	DNA mediated transformation	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009970	cellular response to sulfate starvation	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044764	multi-organism cellular process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	HCCA
MF	GO:0051019	mitogen-activated protein kinase binding	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051704	multi-organism process	IEP	HCCA
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT2G42620

AT2G42620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation