Coexpression cluster: Cluster_193 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005634 nucleus 60.0% (42/70) 0.84 5e-06 0.001419
GO:0006464 cellular protein modification process 21.43% (15/70) 1.98 4e-06 0.001724
GO:0036211 protein modification process 21.43% (15/70) 1.98 4e-06 0.001724
GO:0043412 macromolecule modification 22.86% (16/70) 1.78 1.1e-05 0.001879
GO:0070647 protein modification by small protein conjugation or removal 10.0% (7/70) 3.22 1e-05 0.002123
GO:0071323 cellular response to chitin 2.86% (2/70) 8.04 1.9e-05 0.002651
GO:0044260 cellular macromolecule metabolic process 31.43% (22/70) 1.34 2.5e-05 0.00299
GO:0071219 cellular response to molecule of bacterial origin 2.86% (2/70) 7.63 3.8e-05 0.003176
GO:0051127 positive regulation of actin nucleation 2.86% (2/70) 7.63 3.8e-05 0.003176
GO:0051125 regulation of actin nucleation 2.86% (2/70) 7.63 3.8e-05 0.003176
GO:0022402 cell cycle process 11.43% (8/70) 2.54 6.9e-05 0.004459
GO:0044267 cellular protein metabolic process 21.43% (15/70) 1.64 6.6e-05 0.004594
GO:0008061 chitin binding 2.86% (2/70) 7.3 6.3e-05 0.004805
GO:0006486 protein glycosylation 7.14% (5/70) 3.43 0.000103 0.005077
GO:0070085 glycosylation 7.14% (5/70) 3.43 0.000103 0.005077
GO:0043413 macromolecule glycosylation 7.14% (5/70) 3.43 0.000103 0.005077
GO:0051495 positive regulation of cytoskeleton organization 2.86% (2/70) 6.82 0.000132 0.005531
GO:1902905 positive regulation of supramolecular fiber organization 2.86% (2/70) 6.82 0.000132 0.005531
GO:0071417 cellular response to organonitrogen compound 2.86% (2/70) 6.82 0.000132 0.005531
GO:0071216 cellular response to biotic stimulus 2.86% (2/70) 7.04 9.4e-05 0.005654
GO:0031209 SCAR complex 2.86% (2/70) 6.63 0.000175 0.006403
GO:0043226 organelle 81.43% (57/70) 0.42 0.00017 0.006496
GO:0010048 vernalization response 5.71% (4/70) 3.82 0.00019 0.006666
GO:0019538 protein metabolic process 24.29% (17/70) 1.37 0.000207 0.006693
GO:0043229 intracellular organelle 81.43% (57/70) 0.42 0.000168 0.006714
GO:0043170 macromolecule metabolic process 34.29% (24/70) 1.06 0.000205 0.006888
GO:0050789 regulation of biological process 34.29% (24/70) 1.03 0.000276 0.008593
GO:0004842 ubiquitin-protein transferase activity 7.14% (5/70) 3.08 0.000315 0.008837
GO:0043227 membrane-bounded organelle 80.0% (56/70) 0.41 0.000315 0.009133
GO:0009987 cellular process 57.14% (40/70) 0.65 0.000342 0.009272
GO:0019787 ubiquitin-like protein transferase activity 7.14% (5/70) 3.05 0.000354 0.009309
GO:0043231 intracellular membrane-bounded organelle 80.0% (56/70) 0.41 0.000311 0.009336
GO:0051130 positive regulation of cellular component organization 4.29% (3/70) 4.21 0.000579 0.013919
GO:0010638 positive regulation of organelle organization 4.29% (3/70) 4.21 0.000579 0.013919
GO:0042743 hydrogen peroxide metabolic process 5.71% (4/70) 3.41 0.000563 0.014349
GO:0110053 regulation of actin filament organization 2.86% (2/70) 5.72 0.000649 0.014367
GO:0032970 regulation of actin filament-based process 2.86% (2/70) 5.72 0.000649 0.014367
GO:0032956 regulation of actin cytoskeleton organization 2.86% (2/70) 5.72 0.000649 0.014367
GO:0072593 reactive oxygen species metabolic process 5.71% (4/70) 3.23 0.000901 0.01944
GO:0050665 hydrogen peroxide biosynthetic process 4.29% (3/70) 3.94 0.000993 0.019893
GO:1903409 reactive oxygen species biosynthetic process 4.29% (3/70) 3.94 0.000993 0.019893
GO:0010468 regulation of gene expression 20.0% (14/70) 1.34 0.001031 0.02017
GO:0010228 vegetative to reproductive phase transition of meristem 7.14% (5/70) 2.73 0.00096 0.020177
GO:0016926 protein desumoylation 4.29% (3/70) 3.91 0.00107 0.020453
GO:1902903 regulation of supramolecular fiber organization 2.86% (2/70) 5.3 0.001165 0.021774
GO:0140096 catalytic activity, acting on a protein 15.71% (11/70) 1.54 0.001275 0.023318
GO:0016567 protein ubiquitination 5.71% (4/70) 3.04 0.001444 0.023355
GO:0000910 cytokinesis 5.71% (4/70) 3.05 0.001417 0.02336
GO:0000911 cytokinesis by cell plate formation 5.71% (4/70) 3.08 0.001311 0.023452
GO:0065007 biological regulation 34.29% (24/70) 0.88 0.001376 0.023616
GO:0051493 regulation of cytoskeleton organization 2.86% (2/70) 5.17 0.001412 0.023748
GO:0042803 protein homodimerization activity 4.29% (3/70) 3.78 0.001367 0.023959
GO:0002757 immune response-activating signal transduction 1.43% (1/70) 8.63 0.002531 0.026281
GO:0048358 mucilage pectin biosynthetic process 1.43% (1/70) 8.63 0.002531 0.026281
GO:1902117 positive regulation of organelle assembly 1.43% (1/70) 8.63 0.002531 0.026281
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 1.43% (1/70) 8.63 0.002531 0.026281
GO:0051924 regulation of calcium ion transport 1.43% (1/70) 8.63 0.002531 0.026281
GO:2001080 chitosan binding 1.43% (1/70) 8.63 0.002531 0.026281
GO:0033962 P-body assembly 1.43% (1/70) 8.63 0.002531 0.026281
GO:0051928 positive regulation of calcium ion transport 1.43% (1/70) 8.63 0.002531 0.026281
GO:0032494 response to peptidoglycan 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002768 immune response-regulating cell surface receptor signaling pathway 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002220 innate immune response activating cell surface receptor signaling pathway 1.43% (1/70) 8.63 0.002531 0.026281
GO:0010603 regulation of cytoplasmic mRNA processing body assembly 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002758 innate immune response-activating signal transduction 1.43% (1/70) 8.63 0.002531 0.026281
GO:0032490 detection of molecule of bacterial origin 1.43% (1/70) 8.63 0.002531 0.026281
GO:0032499 detection of peptidoglycan 1.43% (1/70) 8.63 0.002531 0.026281
GO:1902584 positive regulation of response to water deprivation 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002221 pattern recognition receptor signaling pathway 1.43% (1/70) 8.63 0.002531 0.026281
GO:0032491 detection of molecule of fungal origin 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002752 cell surface pattern recognition receptor signaling pathway 1.43% (1/70) 8.63 0.002531 0.026281
GO:0002429 immune response-activating cell surface receptor signaling pathway 1.43% (1/70) 8.63 0.002531 0.026281
GO:1902115 regulation of organelle assembly 1.43% (1/70) 8.63 0.002531 0.026281
GO:1901699 cellular response to nitrogen compound 2.86% (2/70) 4.72 0.002624 0.026914
GO:0048518 positive regulation of biological process 11.43% (8/70) 1.84 0.001744 0.027679
GO:0050896 response to stimulus 35.71% (25/70) 0.78 0.002768 0.02805
GO:0010091 trichome branching 2.86% (2/70) 4.98 0.001825 0.028417
GO:0045087 innate immune response 5.71% (4/70) 2.77 0.00287 0.028733
GO:0002376 immune system process 7.14% (5/70) 2.5 0.001924 0.029426
GO:0032446 protein modification by small protein conjugation 5.71% (4/70) 2.9 0.002038 0.030602
GO:0006955 immune response 5.71% (4/70) 2.73 0.003145 0.030753
GO:0098791 Golgi apparatus subcompartment 5.71% (4/70) 2.73 0.003145 0.030753
GO:0010629 negative regulation of gene expression 7.14% (5/70) 2.33 0.003245 0.03101
GO:0006623 protein targeting to vacuole 4.29% (3/70) 3.33 0.003367 0.031114
GO:0072666 establishment of protein localization to vacuole 4.29% (3/70) 3.33 0.003367 0.031114
GO:0072665 protein localization to vacuole 4.29% (3/70) 3.33 0.003367 0.031114
GO:0018193 peptidyl-amino acid modification 7.14% (5/70) 2.3 0.003497 0.03129
GO:0000226 microtubule cytoskeleton organization 5.71% (4/70) 2.72 0.00324 0.031322
GO:0009791 post-embryonic development 8.57% (6/70) 2.04 0.003436 0.031414
GO:0009628 response to abiotic stimulus 21.43% (15/70) 1.1 0.003479 0.031461
GO:0051641 cellular localization 12.86% (9/70) 1.54 0.003555 0.031474
GO:0022414 reproductive process 18.57% (13/70) 1.2 0.003622 0.031726
GO:0046983 protein dimerization activity 4.29% (3/70) 3.28 0.003697 0.032056
GO:0044238 primary metabolic process 38.57% (27/70) 0.75 0.002363 0.034261
GO:0005802 trans-Golgi network 5.71% (4/70) 2.84 0.00241 0.034346
GO:0060255 regulation of macromolecule metabolic process 20.0% (14/70) 1.21 0.002457 0.034434
GO:0007010 cytoskeleton organization 7.14% (5/70) 2.44 0.002337 0.034484
GO:0007017 microtubule-based process 5.71% (4/70) 2.61 0.004248 0.036086
GO:0016740 transferase activity 21.43% (15/70) 1.07 0.004232 0.036321
GO:0007034 vacuolar transport 4.29% (3/70) 3.2 0.004322 0.036349
GO:0010605 negative regulation of macromolecule metabolic process 8.57% (6/70) 1.95 0.004572 0.038066
GO:0051128 regulation of cellular component organization 5.71% (4/70) 2.53 0.005113 0.038395
GO:0009409 response to cold 8.57% (6/70) 1.92 0.005096 0.038607
GO:0006517 protein deglycosylation 1.43% (1/70) 7.63 0.005056 0.038656
GO:0043967 histone H4 acetylation 1.43% (1/70) 7.63 0.005056 0.038656
GO:0046854 phosphatidylinositol phosphate biosynthetic process 1.43% (1/70) 7.63 0.005056 0.038656
GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity 1.43% (1/70) 7.63 0.005056 0.038656
GO:0002764 immune response-regulating signaling pathway 1.43% (1/70) 7.63 0.005056 0.038656
GO:0070646 protein modification by small protein removal 4.29% (3/70) 3.14 0.004805 0.038858
GO:0006996 organelle organization 12.86% (9/70) 1.47 0.004863 0.038949
GO:0097708 intracellular vesicle 5.71% (4/70) 2.56 0.004792 0.039125
GO:0031410 cytoplasmic vesicle 5.71% (4/70) 2.56 0.004792 0.039125
GO:0030054 cell junction 10.0% (7/70) 1.7 0.005762 0.041065
GO:0070161 anchoring junction 10.0% (7/70) 1.7 0.005762 0.041065
GO:0005911 cell-cell junction 10.0% (7/70) 1.7 0.005762 0.041065
GO:0031982 vesicle 5.71% (4/70) 2.5 0.005518 0.041066
GO:0009892 negative regulation of metabolic process 8.57% (6/70) 1.88 0.005705 0.041719
GO:0009506 plasmodesma 10.0% (7/70) 1.7 0.00569 0.041978
GO:0006807 nitrogen compound metabolic process 31.43% (22/70) 0.77 0.006207 0.043869
GO:0006508 proteolysis 10.0% (7/70) 1.67 0.006477 0.045395
GO:0016043 cellular component organization 18.57% (13/70) 1.1 0.006616 0.045983
GO:0048573 photoperiodism, flowering 4.29% (3/70) 2.95 0.006933 0.047401
GO:0042802 identical protein binding 4.29% (3/70) 2.95 0.006933 0.047401
GO:0009630 gravitropism 4.29% (3/70) 2.94 0.007058 0.047484
GO:0051649 establishment of localization in cell 11.43% (8/70) 1.5 0.007003 0.047496
GO:0030010 establishment of cell polarity 1.43% (1/70) 7.04 0.007575 0.047897
GO:0032784 regulation of DNA-templated transcription, elongation 1.43% (1/70) 7.04 0.007575 0.047897
GO:0043270 positive regulation of ion transport 1.43% (1/70) 7.04 0.007575 0.047897
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 1.43% (1/70) 7.04 0.007575 0.047897
GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity 1.43% (1/70) 7.04 0.007575 0.047897
GO:0000781 chromosome, telomeric region 1.43% (1/70) 7.04 0.007575 0.047897
GO:0048363 mucilage pectin metabolic process 1.43% (1/70) 7.04 0.007575 0.047897
GO:0016192 vesicle-mediated transport 7.14% (5/70) 2.05 0.00722 0.048188
GO:0019222 regulation of metabolic process 20.0% (14/70) 1.02 0.00775 0.04864
GO:0009648 photoperiodism 4.29% (3/70) 2.89 0.007836 0.048818
GO:0048193 Golgi vesicle transport 5.71% (4/70) 2.35 0.007951 0.049167
GO:0009629 response to gravity 4.29% (3/70) 2.87 0.008107 0.049765
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_1 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_7 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_11 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_69 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_81 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_86 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_101 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_126 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_163 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_174 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_199 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_209 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_212 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_220 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_222 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_225 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_235 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_241 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_250 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_261 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_18 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_165 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_172 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_8 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_55 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_80 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_151 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_160 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_168 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_25 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_114 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_141 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_160 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_187 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_201 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_203 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_207 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_271 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_274 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_290 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_39 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_76 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_116 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_130 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_147 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_181 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (70) (download table)

InterPro Domains

GO Terms

Family Terms