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  5. AT2G43860

AT2G43860


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0002341 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002341_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43860
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT1G05660 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65570 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G43880 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G43890 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59850 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
MF GO:0003994 aconitate hydratase activity IEP HCCA
MF GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEP HCCA
MF GO:0004451 isocitrate lyase activity IEP HCCA
MF GO:0004474 malate synthase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
MF GO:0005274 allantoin:proton symporter activity IEP HCCA
MF GO:0005496 steroid binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006101 citrate metabolic process IEP HCCA
BP GO:0006102 isocitrate metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009686 gibberellin biosynthetic process IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010114 response to red light IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0015720 allantoin transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016101 diterpenoid metabolic process IEP HCCA
BP GO:0016102 diterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016707 gibberellin 3-beta-dioxygenase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
BP GO:0019217 regulation of fatty acid metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031998 regulation of fatty acid beta-oxidation IEP HCCA
BP GO:0032365 intracellular lipid transport IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0032934 sterol binding IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046320 regulation of fatty acid oxidation IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046487 glyoxylate metabolic process IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0050994 regulation of lipid catabolic process IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0071248 cellular response to metal ion IEP HCCA
BP GO:0071281 cellular response to iron ion IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071398 cellular response to fatty acid IEP HCCA
BP GO:0071731 response to nitric oxide IEP HCCA
BP GO:0071732 cellular response to nitric oxide IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0080093 regulation of photorespiration IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901699 cellular response to nitrogen compound IEP HCCA
BP GO:1902170 cellular response to reactive nitrogen species IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 60 385
PLAZA 3.0 Dicots AT2G43860