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AT2G44880


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0007950 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007950_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G44880
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AT3G26630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 205
IPR002885 Pentatricopeptide_repeat 237 280
IPR002885 Pentatricopeptide_repeat 376 405
IPR002885 Pentatricopeptide_repeat 342 366
IPR002885 Pentatricopeptide_repeat 145 170
IPR002885 Pentatricopeptide_repeat 312 339
IPR002885 Pentatricopeptide_repeat 411 435
IPR002885 Pentatricopeptide_repeat 206 233
PLAZA 3.0 Dicots AT2G44880