Coexpression cluster: Cluster_139 (HCCA)

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Average Expression Profile



Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005739 mitochondrion 34.07% (31/91) 1.52 0.0 2.2e-05
GO:0006310 DNA recombination 9.89% (9/91) 3.53 0.0 2.4e-05
GO:0051276 chromosome organization 9.89% (9/91) 3.59 0.0 2.5e-05
GO:0006259 DNA metabolic process 12.09% (11/91) 2.59 2e-06 0.000442
GO:0070192 chromosome organization involved in meiotic cell cycle 5.49% (5/91) 4.19 8e-06 0.000816
GO:0007062 sister chromatid cohesion 6.59% (6/91) 3.69 7e-06 0.000839
GO:0007129 homologous chromosome pairing at meiosis 5.49% (5/91) 4.25 7e-06 0.000907
GO:0006974 cellular response to DNA damage stimulus 8.79% (8/91) 3.04 6e-06 0.00096
GO:0022402 cell cycle process 10.99% (10/91) 2.48 1.2e-05 0.001091
GO:0006996 organelle organization 16.48% (15/91) 1.83 1.8e-05 0.001411
GO:0090304 nucleic acid metabolic process 19.78% (18/91) 1.57 2.8e-05 0.001843
GO:0043412 macromolecule modification 19.78% (18/91) 1.57 2.7e-05 0.001954
GO:0045595 regulation of cell differentiation 4.4% (4/91) 4.34 4.6e-05 0.002848
GO:0032875 regulation of DNA endoreduplication 3.3% (3/91) 5.25 6.6e-05 0.003777
GO:0140527 reciprocal homologous recombination 5.49% (5/91) 3.48 8.9e-05 0.003919
GO:0007131 reciprocal meiotic recombination 5.49% (5/91) 3.48 8.9e-05 0.003919
GO:0035825 homologous recombination 5.49% (5/91) 3.46 9.5e-05 0.003977
GO:0090329 regulation of DNA-dependent DNA replication 3.3% (3/91) 5.19 7.5e-05 0.003997
GO:0006139 nucleobase-containing compound metabolic process 21.98% (20/91) 1.34 8.5e-05 0.004253
GO:0006506 GPI anchor biosynthetic process 2.2% (2/91) 6.66 0.000159 0.006044
GO:1903046 meiotic cell cycle process 6.59% (6/91) 2.91 0.000155 0.006162
GO:0006281 DNA repair 6.59% (6/91) 2.87 0.000176 0.006394
GO:0043227 membrane-bounded organelle 78.02% (71/91) 0.38 0.000222 0.007093
GO:0006505 GPI anchor metabolic process 2.2% (2/91) 6.44 0.000222 0.007389
GO:0044260 cellular macromolecule metabolic process 26.37% (24/91) 1.08 0.000243 0.007435
GO:0043231 intracellular membrane-bounded organelle 78.02% (71/91) 0.38 0.000219 0.007592
GO:0043226 organelle 78.02% (71/91) 0.36 0.000355 0.009757
GO:0045010 actin nucleation 4.4% (4/91) 3.59 0.000351 0.009992
GO:0006302 double-strand break repair 4.4% (4/91) 3.55 0.000392 0.010088
GO:0010431 seed maturation 3.3% (3/91) 4.41 0.000387 0.010273
GO:0010072 primary shoot apical meristem specification 3.3% (3/91) 4.37 0.000414 0.010311
GO:0043229 intracellular organelle 78.02% (71/91) 0.36 0.00035 0.010324
GO:0051225 spindle assembly 3.3% (3/91) 4.31 0.000472 0.01107
GO:0009880 embryonic pattern specification 3.3% (3/91) 4.31 0.000472 0.01107
GO:0043170 macromolecule metabolic process 30.77% (28/91) 0.91 0.000497 0.011312
GO:0007051 spindle organization 3.3% (3/91) 4.25 0.000536 0.011536
GO:0140694 non-membrane-bounded organelle assembly 3.3% (3/91) 4.25 0.000536 0.011536
GO:0007275 multicellular organism development 10.99% (10/91) 1.79 0.000613 0.01191
GO:0070925 organelle assembly 3.3% (3/91) 4.22 0.000569 0.011936
GO:0090421 embryonic meristem initiation 3.3% (3/91) 4.19 0.000604 0.012034
GO:0050793 regulation of developmental process 10.99% (10/91) 1.8 0.000591 0.012087
GO:0043247 telomere maintenance in response to DNA damage 3.3% (3/91) 4.13 0.000678 0.012277
GO:0046483 heterocycle metabolic process 21.98% (20/91) 1.12 0.000654 0.01241
GO:0090305 nucleic acid phosphodiester bond hydrolysis 4.4% (4/91) 3.34 0.000674 0.012483
GO:0032204 regulation of telomere maintenance 3.3% (3/91) 4.08 0.000757 0.01341
GO:0010090 trichome morphogenesis 4.4% (4/91) 3.23 0.000908 0.015738
GO:0048609 multicellular organismal reproductive process 5.49% (5/91) 2.74 0.000953 0.016166
GO:0006275 regulation of DNA replication 4.4% (4/91) 3.18 0.001017 0.016881
GO:0006468 protein phosphorylation 7.69% (7/91) 2.14 0.001062 0.017266
GO:0032200 telomere organization 3.3% (3/91) 3.88 0.001133 0.017702
GO:0000723 telomere maintenance 3.3% (3/91) 3.88 0.001133 0.017702
GO:0006464 cellular protein modification process 14.29% (13/91) 1.4 0.001226 0.018436
GO:0036211 protein modification process 14.29% (13/91) 1.4 0.001226 0.018436
GO:0000003 reproduction 3.3% (3/91) 3.81 0.001299 0.018823
GO:0010564 regulation of cell cycle process 4.4% (4/91) 3.09 0.001293 0.019084
GO:0034641 cellular nitrogen compound metabolic process 21.98% (20/91) 1.04 0.001352 0.019244
GO:0006807 nitrogen compound metabolic process 31.87% (29/91) 0.79 0.001462 0.020442
GO:0007015 actin filament organization 4.4% (4/91) 2.98 0.001697 0.023323
GO:0009790 embryo development 7.69% (7/91) 2.01 0.001808 0.023622
GO:0009793 embryo development ending in seed dormancy 7.69% (7/91) 2.01 0.001808 0.023622
GO:0016569 obsolete covalent chromatin modification 2.2% (2/91) 5.0 0.001766 0.023852
GO:0010332 response to gamma radiation 3.3% (3/91) 3.6 0.001961 0.024422
GO:0051052 regulation of DNA metabolic process 3.3% (3/91) 3.6 0.001961 0.024422
GO:0016043 cellular component organization 18.68% (17/91) 1.11 0.00194 0.024944
GO:0051128 regulation of cellular component organization 5.49% (5/91) 2.48 0.002106 0.025823
GO:0006725 cellular aromatic compound metabolic process 21.98% (20/91) 0.97 0.002345 0.028315
GO:0010014 meristem initiation 4.4% (4/91) 2.83 0.002483 0.029538
GO:0007276 gamete generation 2.2% (2/91) 4.72 0.00259 0.030359
GO:0097435 supramolecular fiber organization 4.4% (4/91) 2.78 0.002812 0.031561
GO:0051726 regulation of cell cycle 5.49% (5/91) 2.38 0.002774 0.031584
GO:0044238 primary metabolic process 36.26% (33/91) 0.66 0.002746 0.031716
GO:0007155 cell adhesion 3.3% (3/91) 3.34 0.003293 0.032807
GO:0022610 biological adhesion 3.3% (3/91) 3.34 0.003293 0.032807
GO:0016558 protein import into peroxisome matrix 3.3% (3/91) 3.29 0.003612 0.033087
GO:0010212 response to ionizing radiation 3.3% (3/91) 3.29 0.003612 0.033087
GO:0015919 peroxisomal membrane transport 3.3% (3/91) 3.29 0.003612 0.033087
GO:0042138 meiotic DNA double-strand break formation 3.3% (3/91) 3.32 0.003397 0.033427
GO:0044111 formation of structure involved in a symbiotic process 1.1% (1/91) 8.25 0.003291 0.033623
GO:0031590 wybutosine metabolic process 1.1% (1/91) 8.25 0.003291 0.033623
GO:0031591 wybutosine biosynthetic process 1.1% (1/91) 8.25 0.003291 0.033623
GO:0052093 formation of specialized structure for nutrient acquisition 1.1% (1/91) 8.25 0.003291 0.033623
GO:0052096 formation of syncytium involving giant cell for nutrient acquisition 1.1% (1/91) 8.25 0.003291 0.033623
GO:0048864 stem cell development 1.1% (1/91) 8.25 0.003291 0.033623
GO:0072663 establishment of protein localization to peroxisome 3.3% (3/91) 3.26 0.003834 0.033955
GO:0072662 protein localization to peroxisome 3.3% (3/91) 3.26 0.003834 0.033955
GO:0006625 protein targeting to peroxisome 3.3% (3/91) 3.26 0.003834 0.033955
GO:0110165 cellular anatomical entity 94.51% (86/91) 0.16 0.003582 0.03399
GO:0021700 developmental maturation 4.4% (4/91) 2.65 0.003902 0.034171
GO:0043574 peroxisomal transport 3.3% (3/91) 3.25 0.003949 0.034207
GO:0003729 mRNA binding 2.2% (2/91) 4.49 0.003563 0.034213
GO:0005829 cytosol 13.19% (12/91) 1.29 0.003522 0.034237
GO:0071695 anatomical structure maturation 4.4% (4/91) 2.73 0.003169 0.035076
GO:0016592 mediator complex 2.2% (2/91) 4.34 0.004387 0.036049
GO:0032504 multicellular organism reproduction 2.2% (2/91) 4.34 0.004387 0.036049
GO:0051301 cell division 3.3% (3/91) 3.2 0.004304 0.036109
GO:0044743 protein transmembrane import into intracellular organelle 3.3% (3/91) 3.2 0.004304 0.036109
GO:1901360 organic cyclic compound metabolic process 21.98% (20/91) 0.9 0.004257 0.036486
GO:0071840 cellular component organization or biogenesis 18.68% (17/91) 0.98 0.004759 0.037928
GO:0061982 meiosis I cell cycle process 3.3% (3/91) 3.16 0.004678 0.038048
GO:0006261 DNA-dependent DNA replication 4.4% (4/91) 2.57 0.004742 0.038173
GO:0045132 meiotic chromosome segregation 3.3% (3/91) 3.08 0.005485 0.04328
GO:0098813 nuclear chromosome segregation 3.3% (3/91) 3.06 0.005627 0.043965
GO:0006264 mitochondrial DNA replication 1.1% (1/91) 7.25 0.00657 0.044757
GO:0010833 telomere maintenance via telomere lengthening 1.1% (1/91) 7.25 0.00657 0.044757
GO:0033259 plastid DNA replication 1.1% (1/91) 7.25 0.00657 0.044757
GO:0007004 telomere maintenance via telomerase 1.1% (1/91) 7.25 0.00657 0.044757
GO:0080171 lytic vacuole organization 1.1% (1/91) 7.25 0.00657 0.044757
GO:0009378 four-way junction helicase activity 1.1% (1/91) 7.25 0.00657 0.044757
GO:0033258 plastid DNA metabolic process 1.1% (1/91) 7.25 0.00657 0.044757
GO:0044786 cell cycle DNA replication 3.3% (3/91) 3.03 0.006066 0.045607
GO:0022414 reproductive process 16.48% (15/91) 1.03 0.006013 0.045642
GO:0042023 DNA endoreduplication 3.3% (3/91) 3.04 0.005917 0.045786
GO:0007049 cell cycle 4.4% (4/91) 2.47 0.005977 0.045802
GO:0004683 calmodulin-dependent protein kinase activity 2.2% (2/91) 4.08 0.006273 0.046728
GO:0003723 RNA binding 6.59% (6/91) 1.83 0.007059 0.047279
GO:0007031 peroxisome organization 3.3% (3/91) 2.95 0.007004 0.047306
GO:0032501 multicellular organismal process 14.29% (13/91) 1.1 0.007142 0.047434
GO:0051716 cellular response to stimulus 10.99% (10/91) 1.32 0.006568 0.047589
GO:0071806 protein transmembrane transport 3.3% (3/91) 2.99 0.006525 0.047708
GO:0065002 intracellular protein transmembrane transport 3.3% (3/91) 2.99 0.006525 0.047708
GO:0005515 protein binding 15.38% (14/91) 1.05 0.007311 0.048154
GO:0048229 gametophyte development 4.4% (4/91) 2.38 0.007409 0.048404
GO:0016310 phosphorylation 7.69% (7/91) 1.63 0.007581 0.04912
GO:0009855 determination of bilateral symmetry 3.3% (3/91) 2.9 0.007675 0.049328
GO:0006796 phosphate-containing compound metabolic process 13.19% (12/91) 1.14 0.007892 0.049922
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_22 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_23 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_38 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_52 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_58 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_72 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_101 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_109 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_122 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_133 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_145 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.034 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_192 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_194 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_220 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_226 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_232 0.048 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_247 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_257 0.038 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_262 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_51 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_55 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_70 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_76 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_175 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_16 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_55 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_134 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_135 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_169 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_1 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_25 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_119 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_130 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_153 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_160 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_207 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_223 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_226 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_239 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_242 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_248 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_288 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_296 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_116 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_146 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_154 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_165 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_169 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (91) (download table)



InterPro Domains



GO Terms



Family Terms