AT2G44950


Description : histone mono-ubiquitination 1


Gene families : OG_01_0001400 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001400_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G44950
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Mp6g03540.1 No alias RING-HC-class E3 ligase 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_2030V3.1 No alias histone mono-ubiquitination 1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Interproscan
BP GO:0003002 regionalization RCA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0006396 RNA processing RCA Interproscan
BP GO:0006406 mRNA export from nucleus RCA Interproscan
BP GO:0006513 protein monoubiquitination IDA Interproscan
BP GO:0007062 sister chromatid cohesion RCA Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
BP GO:0007346 regulation of mitotic cell cycle RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009880 embryonic pattern specification RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009933 meristem structural organization RCA Interproscan
BP GO:0009965 leaf morphogenesis IMP Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010072 primary shoot apical meristem specification RCA Interproscan
BP GO:0010074 maintenance of meristem identity RCA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0010162 seed dormancy process IMP Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IMP Interproscan
BP GO:0010390 histone monoubiquitination IMP Interproscan
BP GO:0010413 glucuronoxylan metabolic process RCA Interproscan
BP GO:0010431 seed maturation RCA Interproscan
BP GO:0010564 regulation of cell cycle process RCA Interproscan
BP GO:0016049 cell growth IMP Interproscan
BP GO:0016049 cell growth RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0016571 histone methylation RCA Interproscan
BP GO:0016579 protein deubiquitination RCA Interproscan
BP GO:0016926 protein desumoylation RCA Interproscan
BP GO:0019915 lipid storage RCA Interproscan
BP GO:0033043 regulation of organelle organization RCA Interproscan
BP GO:0033523 histone H2B ubiquitination IMP Interproscan
MF GO:0042803 protein homodimerization activity IPI Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
BP GO:0045492 xylan biosynthetic process RCA Interproscan
BP GO:0045595 regulation of cell differentiation RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0048366 leaf development RCA Interproscan
BP GO:0048449 floral organ formation RCA Interproscan
BP GO:0048589 developmental growth RCA Interproscan
BP GO:0048825 cotyledon development RCA Interproscan
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Interproscan
BP GO:0050826 response to freezing RCA Interproscan
BP GO:0051301 cell division IMP Interproscan
BP GO:0051301 cell division RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0001664 G protein-coupled receptor binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004156 dihydropteroate synthase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009785 blue light signaling pathway IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009938 negative regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010452 histone H3-K36 methylation IEP HCCA
BP GO:0010555 response to mannitol IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016262 protein N-acetylglucosaminyltransferase activity IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
CC GO:0019897 extrinsic component of plasma membrane IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030522 intracellular receptor signaling pathway IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034250 positive regulation of cellular amide metabolic process IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045892 negative regulation of transcription, DNA-templated IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048826 cotyledon morphogenesis IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0051781 positive regulation of cell division IEP HCCA
BP GO:0055070 copper ion homeostasis IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071483 cellular response to blue light IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905421 regulation of plant organ morphogenesis IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
BP GO:2000067 regulation of root morphogenesis IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT2G44950