AT2G46180

Description : golgin candidate 4

Gene families : OG_01_0002931 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002931_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G46180
Cluster	HCCA: Cluster_248

Target	Alias	Description	ECC score	Gene Family Method
Mp6g07280.1	No alias	golgin (GC3\|GC4)	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_14500V3.1	No alias	golgin candidate 4	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12514.1	No alias	golgin (GC3/GC4)	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0004445	inositol-polyphosphate 5-phosphatase activity	IEP	HCCA
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006513	protein monoubiquitination	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006983	ER overload response	IEP	HCCA
BP	GO:0006984	ER-nucleus signaling pathway	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007041	lysosomal transport	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0008333	endosome to lysosome transport	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010390	histone monoubiquitination	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010506	regulation of autophagy	IEP	HCCA
BP	GO:0010508	positive regulation of autophagy	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016363	nuclear matrix	IEP	HCCA
BP	GO:0016441	posttranscriptional gene silencing	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016574	histone ubiquitination	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0016929	SUMO-specific protease activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022610	biological adhesion	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	HCCA
CC	GO:0030904	retromer complex	IEP	HCCA
BP	GO:0031050	dsRNA processing	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	HCCA
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033523	histone H2B ubiquitination	IEP	HCCA
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	HCCA
BP	GO:0034263	positive regulation of autophagy in response to ER overload	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
CC	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
MF	GO:0046030	inositol trisphosphate phosphatase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	HCCA
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0052745	inositol phosphate phosphatase activity	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	HCCA
BP	GO:0071216	cellular response to biotic stimulus	IEP	HCCA
BP	GO:0071545	inositol phosphate catabolic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT2G46180

AT2G46180

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation