AT3G01340

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0001687 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001687_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G01340
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
Mp4g02570.1	No alias	scaffolding component Sec13 of coat protein complex	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_9370V3.1	No alias	transducin family protein / WD-40 repeat family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_17920V3.1	No alias	transducin family protein / WD-40 repeat family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_20020V3.1	No alias	transducin family protein / WD-40 repeat family protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISS	Interproscan
BP	GO:0006900	vesicle budding from membrane	ISS	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016050	vesicle organization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005798	Golgi-associated vesicle	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	HCCA
BP	GO:0008643	carbohydrate transport	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010191	mucilage metabolic process	IEP	HCCA
BP	GO:0010192	mucilage biosynthetic process	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
MF	GO:0010283	pinoresinol reductase activity	IEP	HCCA
BP	GO:0015774	polysaccharide transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
CC	GO:0016021	integral component of membrane	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016657	oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
CC	GO:0030427	site of polarized growth	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
CC	GO:0035838	growing cell tip	IEP	HCCA
BP	GO:0042814	monopolar cell growth	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
CC	GO:0043230	extracellular organelle	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048219	inter-Golgi cisterna vesicle-mediated transport	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	HCCA
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
CC	GO:0051286	cell tip	IEP	HCCA
CC	GO:0060187	cell pole	IEP	HCCA
CC	GO:0065010	extracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0070062	extracellular exosome	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
CC	GO:0090404	pollen tube tip	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901703	protein localization involved in auxin polar transport	IEP	HCCA
CC	GO:1903561	extracellular vesicle	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	147	192
IPR001680	WD40_repeat	4	37
IPR001680	WD40_repeat	96	132
IPR001680	WD40_repeat	206	241
IPR001680	WD40_repeat	47	86

External Links

PLAZA 3.0 Dicots	AT3G01340

AT3G01340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation