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  5. Zci_15633.1

Zci_15633.1


Description : "small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer "


Gene families : OG_01_0000042 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zci_15633.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT1G67090 No alias ribulose bisphosphate carboxylase small chain 1A 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g120100 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g120150 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06000.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06010.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06020.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06030.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g10850.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g15070.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g15080.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_7010V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_7030V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15786V3.1 No alias No annotation 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15800V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15910V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_15980V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_16000V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_16130V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_22720V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_22730V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_540V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_4100V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_14510V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_18750V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_20110V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005261 cation channel activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006848 pyruvate transport IEP HCCA
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015718 monocarboxylic acid transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0034220 ion transmembrane transport IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0098656 anion transmembrane transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901475 pyruvate transmembrane transport IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 75 182
No external refs found!