AT3G04450

Description : Homeodomain-like superfamily protein

Gene families : OG_01_0008232 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008232_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04450
Cluster	HCCA: Cluster_102

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003933	GTP cyclohydrolase activity	IEP	HCCA
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	HCCA
MF	GO:0004121	cystathionine beta-lyase activity	IEP	HCCA
MF	GO:0004328	formamidase activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004551	nucleotide diphosphatase activity	IEP	HCCA
MF	GO:0004856	xylulokinase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0005388	P-type calcium transporter activity	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006882	cellular zinc ion homeostasis	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0007167	enzyme linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	HCCA
BP	GO:0009092	homoserine metabolic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0016119	carotene metabolic process	IEP	HCCA
BP	GO:0016120	carotene biosynthetic process	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016882	cyclo-ligase activity	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
BP	GO:0019279	L-methionine biosynthetic process from L-homoserine via cystathionine	IEP	HCCA
MF	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0032365	intracellular lipid transport	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0034196	acylglycerol transport	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043624	cellular protein complex disassembly	IEP	HCCA
MF	GO:0045436	lycopene beta cyclase activity	IEP	HCCA
BP	GO:0046246	terpene biosynthetic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
MF	GO:0047884	FAD diphosphatase activity	IEP	HCCA
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	HCCA
MF	GO:0070300	phosphatidic acid binding	IEP	HCCA
BP	GO:0071265	L-methionine biosynthetic process	IEP	HCCA
BP	GO:0071266	'de novo' L-methionine biosynthetic process	IEP	HCCA
BP	GO:1901965	endoplasmic reticulum to chloroplast transport	IEP	HCCA
BP	GO:1990052	ER to chloroplast lipid transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	240	291
IPR025756	Myb_CC_LHEQLE	326	373

External Links

PLAZA 3.0 Dicots	AT3G04450

AT3G04450

Expression Profile

Co-expression Networks

Functional Annotation