Coexpression cluster: Cluster_102 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 50.88% (29/57) 1.88 0.0 0.0
GO:0009507 chloroplast 50.88% (29/57) 1.91 0.0 0.0
GO:0042793 plastid transcription 8.77% (5/57) 5.09 0.0 6.9e-05
GO:0034660 ncRNA metabolic process 10.53% (6/57) 3.09 7.4e-05 0.002791
GO:0061024 membrane organization 8.77% (5/57) 3.53 7.3e-05 0.002946
GO:0006351 transcription, DNA-templated 8.77% (5/57) 3.78 3.2e-05 0.002969
GO:0097659 nucleic acid-templated transcription 8.77% (5/57) 3.78 3.2e-05 0.002969
GO:0051656 establishment of organelle localization 7.02% (4/57) 4.19 6.9e-05 0.002988
GO:0019750 chloroplast localization 7.02% (4/57) 4.22 6.4e-05 0.003006
GO:0051644 plastid localization 7.02% (4/57) 4.22 6.4e-05 0.003006
GO:0009658 chloroplast organization 8.77% (5/57) 3.37 0.000122 0.003265
GO:0016072 rRNA metabolic process 8.77% (5/57) 3.37 0.000122 0.003265
GO:0016556 mRNA modification 7.02% (4/57) 4.08 9.5e-05 0.003333
GO:0016070 RNA metabolic process 19.3% (11/57) 1.95 0.000104 0.003465
GO:0051667 establishment of plastid localization 7.02% (4/57) 4.24 6.2e-05 0.003474
GO:0009902 chloroplast relocation 7.02% (4/57) 4.24 6.2e-05 0.003474
GO:0006364 rRNA processing 8.77% (5/57) 3.38 0.000119 0.003538
GO:0046483 heterocycle metabolic process 28.07% (16/57) 1.47 0.000117 0.00366
GO:0009668 plastid membrane organization 8.77% (5/57) 3.62 5.4e-05 0.00381
GO:0010027 thylakoid membrane organization 8.77% (5/57) 3.62 5.4e-05 0.00381
GO:0042726 flavin-containing compound metabolic process 3.51% (2/57) 6.75 0.000149 0.003816
GO:0018130 heterocycle biosynthetic process 17.54% (10/57) 2.3 3e-05 0.004213
GO:0044271 cellular nitrogen compound biosynthetic process 17.54% (10/57) 1.98 0.000186 0.004562
GO:0034641 cellular nitrogen compound metabolic process 28.07% (16/57) 1.39 0.000231 0.005207
GO:0034470 ncRNA processing 8.77% (5/57) 3.18 0.000228 0.005369
GO:0045893 positive regulation of transcription, DNA-templated 10.53% (6/57) 2.69 0.000327 0.006145
GO:1903508 positive regulation of nucleic acid-templated transcription 10.53% (6/57) 2.69 0.000327 0.006145
GO:1902680 positive regulation of RNA biosynthetic process 10.53% (6/57) 2.69 0.000327 0.006145
GO:0051254 positive regulation of RNA metabolic process 10.53% (6/57) 2.69 0.000327 0.006145
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 10.53% (6/57) 2.67 0.000347 0.006306
GO:0009657 plastid organization 8.77% (5/57) 3.0 0.000401 0.006859
GO:0090304 nucleic acid metabolic process 21.05% (12/57) 1.66 0.00032 0.006937
GO:0032774 RNA biosynthetic process 8.77% (5/57) 3.01 0.000395 0.006968
GO:0010207 photosystem II assembly 7.02% (4/57) 3.46 0.000481 0.007144
GO:0051640 organelle localization 7.02% (4/57) 3.46 0.000481 0.007144
GO:0010557 positive regulation of macromolecule biosynthetic process 10.53% (6/57) 2.61 0.00044 0.007297
GO:0051173 positive regulation of nitrogen compound metabolic process 10.53% (6/57) 2.59 0.00048 0.007524
GO:0031328 positive regulation of cellular biosynthetic process 10.53% (6/57) 2.59 0.000475 0.007655
GO:0010604 positive regulation of macromolecule metabolic process 10.53% (6/57) 2.55 0.000546 0.007897
GO:0031325 positive regulation of cellular metabolic process 10.53% (6/57) 2.53 0.000582 0.008199
GO:0009965 leaf morphogenesis 7.02% (4/57) 3.37 0.000617 0.008483
GO:1901360 organic cyclic compound metabolic process 28.07% (16/57) 1.25 0.000692 0.009295
GO:1901362 organic cyclic compound biosynthetic process 17.54% (10/57) 1.71 0.000824 0.010805
GO:0019438 aromatic compound biosynthetic process 15.79% (9/57) 1.82 0.000919 0.011774
GO:0006139 nucleobase-containing compound metabolic process 22.81% (13/57) 1.39 0.000987 0.012366
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 5.26% (3/57) 3.89 0.001099 0.012913
GO:0006766 vitamin metabolic process 5.26% (3/57) 3.89 0.001099 0.012913
GO:0006396 RNA processing 12.28% (7/57) 2.12 0.001081 0.013252
GO:0009891 positive regulation of biosynthetic process 10.53% (6/57) 2.31 0.001281 0.013892
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 7.02% (4/57) 3.09 0.001262 0.01396
GO:0019682 glyceraldehyde-3-phosphate metabolic process 7.02% (4/57) 3.09 0.001262 0.01396
GO:0006725 cellular aromatic compound metabolic process 26.32% (15/57) 1.23 0.00122 0.014042
GO:0046490 isopentenyl diphosphate metabolic process 7.02% (4/57) 3.06 0.001346 0.014055
GO:0009240 isopentenyl diphosphate biosynthetic process 7.02% (4/57) 3.06 0.001346 0.014055
GO:0009893 positive regulation of metabolic process 10.53% (6/57) 2.24 0.001637 0.016786
GO:0046502 uroporphyrinogen III metabolic process 1.75% (1/57) 8.92 0.002061 0.01735
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine 1.75% (1/57) 8.92 0.002061 0.01735
GO:0047884 FAD diphosphatase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0009092 homoserine metabolic process 1.75% (1/57) 8.92 0.002061 0.01735
GO:0071266 'de novo' L-methionine biosynthetic process 1.75% (1/57) 8.92 0.002061 0.01735
GO:0045436 lycopene beta cyclase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0006780 uroporphyrinogen III biosynthetic process 1.75% (1/57) 8.92 0.002061 0.01735
GO:0004852 uroporphyrinogen-III synthase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0016754 sinapoylglucose-malate O-sinapoyltransferase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0016753 O-sinapoyltransferase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0046422 violaxanthin de-epoxidase activity 1.75% (1/57) 8.92 0.002061 0.01735
GO:0010028 xanthophyll cycle 1.75% (1/57) 8.92 0.002061 0.01735
GO:1901566 organonitrogen compound biosynthetic process 15.79% (9/57) 1.63 0.002257 0.018718
GO:0006779 porphyrin-containing compound biosynthetic process 5.26% (3/57) 3.43 0.002746 0.022443
GO:0009108 obsolete coenzyme biosynthetic process 3.51% (2/57) 4.6 0.003096 0.022975
GO:0006733 obsolete oxidoreduction coenzyme metabolic process 3.51% (2/57) 4.6 0.003096 0.022975
GO:0048522 positive regulation of cellular process 10.53% (6/57) 2.07 0.002993 0.023122
GO:0035303 regulation of dephosphorylation 5.26% (3/57) 3.38 0.003043 0.023189
GO:0033014 tetrapyrrole biosynthetic process 5.26% (3/57) 3.39 0.002982 0.023356
GO:0035304 regulation of protein dephosphorylation 5.26% (3/57) 3.39 0.002982 0.023356
GO:0009106 lipoate metabolic process 3.51% (2/57) 4.56 0.00325 0.023503
GO:0006790 sulfur compound metabolic process 10.53% (6/57) 2.05 0.003234 0.023685
GO:0044272 sulfur compound biosynthetic process 8.77% (5/57) 2.35 0.002969 0.023918
GO:1905392 plant organ morphogenesis 7.02% (4/57) 2.66 0.003705 0.026453
GO:0004328 formamidase activity 1.75% (1/57) 7.92 0.004118 0.027324
GO:0004856 xylulokinase activity 1.75% (1/57) 7.92 0.004118 0.027324
GO:0004121 cystathionine beta-lyase activity 1.75% (1/57) 7.92 0.004118 0.027324
GO:0005363 maltose transmembrane transporter activity 1.75% (1/57) 7.92 0.004118 0.027324
GO:0016752 sinapoyltransferase activity 1.75% (1/57) 7.92 0.004118 0.027324
GO:0044249 cellular biosynthetic process 26.32% (15/57) 1.05 0.004048 0.028541
GO:0006081 cellular aldehyde metabolic process 7.02% (4/57) 2.57 0.004583 0.029709
GO:0009451 RNA modification 7.02% (4/57) 2.58 0.004533 0.029731
GO:0009941 chloroplast envelope 8.77% (5/57) 2.18 0.004908 0.031454
GO:0009526 plastid envelope 8.77% (5/57) 2.16 0.005102 0.032332
GO:0006546 glycine catabolic process 3.51% (2/57) 4.22 0.00518 0.032464
GO:0006807 nitrogen compound metabolic process 33.33% (19/57) 0.85 0.005255 0.032568
GO:0009071 serine family amino acid catabolic process 3.51% (2/57) 4.17 0.005576 0.034183
GO:0016071 mRNA metabolic process 7.02% (4/57) 2.48 0.005705 0.034598
GO:0003935 GTP cyclohydrolase II activity 1.75% (1/57) 7.34 0.006171 0.03588
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.75% (1/57) 7.34 0.006171 0.03588
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 1.75% (1/57) 7.34 0.006171 0.03588
GO:0009058 biosynthetic process 28.07% (16/57) 0.95 0.006017 0.036104
GO:0006544 glycine metabolic process 3.51% (2/57) 4.06 0.006407 0.036873
GO:0019220 regulation of phosphate metabolic process 5.26% (3/57) 2.89 0.007746 0.043256
GO:0051174 regulation of phosphorus metabolic process 5.26% (3/57) 2.89 0.007746 0.043256
GO:0003824 catalytic activity 38.6% (22/57) 0.72 0.007603 0.043311
GO:0031967 organelle envelope 8.77% (5/57) 2.01 0.007934 0.043443
GO:0031975 envelope 8.77% (5/57) 2.01 0.007934 0.043443
GO:0008654 phospholipid biosynthetic process 7.02% (4/57) 2.33 0.008323 0.043465
GO:0033013 tetrapyrrole metabolic process 5.26% (3/57) 2.85 0.00841 0.043517
GO:0003933 GTP cyclohydrolase activity 1.75% (1/57) 6.92 0.008219 0.043734
GO:0031399 regulation of protein modification process 5.26% (3/57) 2.86 0.008297 0.043735
GO:0006778 porphyrin-containing compound metabolic process 5.26% (3/57) 2.86 0.008185 0.043966
GO:0034654 nucleobase-containing compound biosynthetic process 8.77% (5/57) 2.0 0.008151 0.044204
GO:0006636 unsaturated fatty acid biosynthetic process 3.51% (2/57) 3.79 0.009214 0.046817
GO:0033559 unsaturated fatty acid metabolic process 3.51% (2/57) 3.79 0.009214 0.046817
GO:0031978 plastid thylakoid lumen 3.51% (2/57) 3.77 0.009469 0.047259
GO:0009543 chloroplast thylakoid lumen 3.51% (2/57) 3.77 0.009469 0.047259
GO:0048518 positive regulation of biological process 10.53% (6/57) 1.72 0.009574 0.047368
GO:0006644 phospholipid metabolic process 7.02% (4/57) 2.25 0.009969 0.048892
GO:0071265 L-methionine biosynthetic process 1.75% (1/57) 6.6 0.010264 0.049477
GO:0008652 cellular amino acid biosynthetic process 7.02% (4/57) 2.24 0.01022 0.049691
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_34 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_41 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_51 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_129 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_132 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_143 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_148 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_149 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_188 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_212 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_232 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_246 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_40 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_103 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_136 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_42 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_51 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_61 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_108 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_112 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_119 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_120 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_129 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_136 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_163 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_20 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_37 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_84 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_97 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_99 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_120 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_170 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_177 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_193 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_195 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_197 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_222 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_278 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_297 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_25 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_90 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_147 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_157 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (57) (download table)

InterPro Domains

GO Terms

Family Terms