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  5. AT3G05250

AT3G05250


Description : RING/U-box superfamily protein


Gene families : OG_01_0008570 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G05250
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Pp3c3_27350V3.1 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0007165 signal transduction RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009755 hormone-mediated signaling pathway RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004520 endodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004788 thiamine diphosphokinase activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006294 nucleotide-excision repair, preincision complex assembly IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008143 poly(A) binding IEP HCCA
MF GO:0009011 starch synthase activity IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010213 non-photoreactive DNA repair IEP HCCA
BP GO:0010351 lithium ion transport IEP HCCA
MF GO:0010385 double-stranded methylated DNA binding IEP HCCA
BP GO:0010562 positive regulation of phosphorus metabolic process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0010922 positive regulation of phosphatase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017108 5'-flap endonuclease activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0035306 positive regulation of dephosphorylation IEP HCCA
BP GO:0035510 DNA dealkylation IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045937 positive regulation of phosphate metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0048256 flap endonuclease activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051345 positive regulation of hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0080111 DNA demethylation IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901968 regulation of polynucleotide 3'-phosphatase activity IEP HCCA
BP GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity IEP HCCA
BP GO:1901971 regulation of DNA-5-methylcytosine glycosylase activity IEP HCCA
BP GO:1901972 positive regulation of DNA-5-methylcytosine glycosylase activity IEP HCCA
BP GO:1902544 regulation of DNA N-glycosylase activity IEP HCCA
BP GO:1902546 positive regulation of DNA N-glycosylase activity IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 22 70
PLAZA 3.0 Dicots AT3G05250