AT3G05970

Description : long-chain acyl-CoA synthetase 6

Gene families : OG_01_0002646 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002646_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G05970
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g507400	No alias	Lipid metabolism.lipid degradation.fatty acid...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g16310.1	No alias	peroxisomal long-chain acyl-CoA synthetase	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_2490V3.1	No alias	long-chain acyl-CoA synthetase 7	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0001676	long-chain fatty acid metabolic process	RCA	Interproscan
BP	GO:0001676	long-chain fatty acid metabolic process	TAS	Interproscan
BP	GO:0002213	defense response to insect	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IDA	Interproscan
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005777	peroxisome	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	TAS	Interproscan
BP	GO:0006633	fatty acid biosynthetic process	RCA	Interproscan
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010193	response to ozone	IEP	Interproscan
MF	GO:0015645	fatty acid ligase activity	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042579	microbody	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000303	response to superoxide	IEP	HCCA
BP	GO:0000305	response to oxygen radical	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
CC	GO:0000502	proteasome complex	IEP	HCCA
MF	GO:0003988	acetyl-CoA C-acyltransferase activity	IEP	HCCA
MF	GO:0003994	aconitate hydratase activity	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0004930	G protein-coupled receptor activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
CC	GO:0005782	peroxisomal matrix	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005887	integral component of plasma membrane	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006101	citrate metabolic process	IEP	HCCA
BP	GO:0006102	isocitrate metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006464	cellular protein modification process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006862	nucleotide transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009820	alkaloid metabolic process	IEP	HCCA
BP	GO:0009821	alkaloid biosynthetic process	IEP	HCCA
BP	GO:0009967	positive regulation of signal transduction	IEP	HCCA
CC	GO:0010008	endosome membrane	IEP	HCCA
BP	GO:0010039	response to iron ion	IEP	HCCA
BP	GO:0010111	glyoxysome organization	IEP	HCCA
BP	GO:0010260	animal organ senescence	IEP	HCCA
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010647	positive regulation of cell communication	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
MF	GO:0015334	high-affinity oligopeptide transmembrane transporter activity	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016408	C-acyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016656	monodehydroascorbate reductase (NADH) activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0023056	positive regulation of signaling	IEP	HCCA
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
CC	GO:0031907	microbody lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
MF	GO:0035673	oligopeptide transmembrane transporter activity	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
MF	GO:0042937	tripeptide transmembrane transporter activity	IEP	HCCA
BP	GO:0042938	dipeptide transport	IEP	HCCA
BP	GO:0042939	tripeptide transport	IEP	HCCA
BP	GO:0043087	regulation of GTPase activity	IEP	HCCA
BP	GO:0043132	NAD transport	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043547	positive regulation of GTPase activity	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
BP	GO:0044375	regulation of peroxisome size	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
MF	GO:0046577	long-chain-alcohol oxidase activity	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051345	positive regulation of hydrolase activity	IEP	HCCA
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0055072	iron ion homeostasis	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1902652	secondary alcohol metabolic process	IEP	HCCA
MF	GO:1904680	peptide transmembrane transporter activity	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000873	AMP-dep_Synth/Lig	113	555

External Links

PLAZA 3.0 Dicots	AT3G05970

AT3G05970

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation