AT3G08860

Description : PYRIMIDINE 4

Gene families : OG_01_0017847 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G08860
Cluster	HCCA: Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007568	aging	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008453	alanine-glyoxylate transaminase activity	ISS	Interproscan
MF	GO:0008483	transaminase activity	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009830	cell wall modification involved in abscission	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016769	transferase activity, transferring nitrogenous groups	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0043562	cellular response to nitrogen levels	IEP	Interproscan
BP	GO:0044277	cell wall disassembly	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000064	L-ornithine transmembrane transporter activity	IEP	HCCA
MF	GO:0000257	nitrilase activity	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
BP	GO:0003008	system process	IEP	HCCA
BP	GO:0003013	circulatory system process	IEP	HCCA
BP	GO:0003018	vascular process in circulatory system	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005290	L-histidine transmembrane transporter activity	IEP	HCCA
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	HCCA
MF	GO:0005476	carnitine:acyl carnitine antiporter activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005887	integral component of plasma membrane	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006561	proline biosynthetic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0008300	isoprenoid catabolic process	IEP	HCCA
MF	GO:0008324	cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008509	anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009309	amine biosynthetic process	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010036	response to boron-containing substance	IEP	HCCA
BP	GO:0010184	cytokinin transport	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010232	vascular transport	IEP	HCCA
BP	GO:0010233	phloem transport	IEP	HCCA
BP	GO:0010260	animal organ senescence	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010540	basipetal auxin transport	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
MF	GO:0015075	ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	HCCA
MF	GO:0015116	sulfate transmembrane transporter activity	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015173	aromatic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
MF	GO:0015211	purine nucleoside transmembrane transporter activity	IEP	HCCA
MF	GO:0015226	carnitine transmembrane transporter activity	IEP	HCCA
MF	GO:0015227	acyl carnitine transmembrane transporter activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015651	quaternary ammonium group transmembrane transporter activity	IEP	HCCA
BP	GO:0015700	arsenite transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016110	tetraterpenoid catabolic process	IEP	HCCA
BP	GO:0016115	terpenoid catabolic process	IEP	HCCA
BP	GO:0016118	carotenoid catabolic process	IEP	HCCA
BP	GO:0016119	carotene metabolic process	IEP	HCCA
BP	GO:0016121	carotene catabolic process	IEP	HCCA
BP	GO:0016122	xanthophyll metabolic process	IEP	HCCA
BP	GO:0016124	xanthophyll catabolic process	IEP	HCCA
CC	GO:0016328	lateral plasma membrane	IEP	HCCA
CC	GO:0016602	CCAAT-binding factor complex	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0018822	nitrile hydratase activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0030410	nicotianamine synthase activity	IEP	HCCA
BP	GO:0030417	nicotianamine metabolic process	IEP	HCCA
BP	GO:0030418	nicotianamine biosynthetic process	IEP	HCCA
BP	GO:0042214	terpene metabolic process	IEP	HCCA
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
MF	GO:0045431	flavonol synthase activity	IEP	HCCA
BP	GO:0046247	terpene catabolic process	IEP	HCCA
BP	GO:0046685	response to arsenic-containing substance	IEP	HCCA
BP	GO:0046713	borate transport	IEP	HCCA
MF	GO:0046715	active borate transmembrane transporter activity	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0072351	tricarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0080029	cellular response to boron-containing substance levels	IEP	HCCA
MF	GO:0080061	indole-3-acetonitrile nitrilase activity	IEP	HCCA
MF	GO:0080109	indole-3-acetonitrile nitrile hydratase activity	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0120253	hydrocarbon catabolic process	IEP	HCCA
MF	GO:1901474	azole transmembrane transporter activity	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005814	Aminotrans_3	81	477

External Links

PLAZA 3.0 Dicots	AT3G08860

AT3G08860

Expression Profile

Co-expression Networks

Functional Annotation