AT1G12560

Description : expansin A7

Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12560
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AT2G37640	No alias	Barwin-like endoglucanases superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G40610	No alias	expansin A8	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01630	No alias	expansin A17	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39300	No alias	expansin A25	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g22700.1	No alias	alpha-class expansin	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g24230.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g26350.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g18600.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g03970.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g24470.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g01930.1	No alias	alpha-class expansin	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_20360V3.1	No alias	expansin A9	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19660V3.1	No alias	expansin A9	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19720V3.1	No alias	expansin A1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_1850V3.1	No alias	expansin A1	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_16280V3.1	No alias	expansin A14	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010054	trichoblast differentiation	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048444	floral organ morphogenesis	None	Extended
BP	GO:0048446	petal morphogenesis	RCA	Interproscan
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090697	post-embryonic plant organ morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006820	anion transport	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006829	zinc ion transport	IEP	HCCA
BP	GO:0007043	cell-cell junction assembly	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
MF	GO:0008446	GDP-mannose 4,6-dehydratase activity	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009531	secondary cell wall	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009806	lignan metabolic process	IEP	HCCA
BP	GO:0009807	lignan biosynthetic process	IEP	HCCA
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0010466	negative regulation of peptidase activity	IEP	HCCA
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transport	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0030162	regulation of proteolysis	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IEP	HCCA
CC	GO:0031224	intrinsic component of membrane	IEP	HCCA
CC	GO:0031225	anchored component of membrane	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0034329	cell junction assembly	IEP	HCCA
BP	GO:0034330	cell junction organization	IEP	HCCA
BP	GO:0035864	response to potassium ion	IEP	HCCA
BP	GO:0035865	cellular response to potassium ion	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045216	cell-cell junction organization	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0045861	negative regulation of proteolysis	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
CC	GO:0048226	Casparian strip	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048766	root hair initiation	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
BP	GO:0052547	regulation of peptidase activity	IEP	HCCA
BP	GO:0052548	regulation of endopeptidase activity	IEP	HCCA
BP	GO:0055062	phosphate ion homeostasis	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0072506	trivalent inorganic anion homeostasis	IEP	HCCA
BP	GO:0072732	cellular response to calcium ion starvation	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007117	Expansin_CBD	168	246
IPR009009	RlpA-like_DPBB	72	157

External Links

PLAZA 3.0 Dicots	AT1G12560

AT1G12560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation