AT3G12380


Description : actin-related protein 5


Gene families : OG_01_0006503 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006503_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12380
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Mp3g02220.1 No alias component ARP5 of INO80 chromatin remodeling complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_16050V3.1 No alias actin-related protein 5 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05281.2 No alias component ARP5 of INO80 chromatin remodeling complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005200 structural constituent of cytoskeleton ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005634 nucleus TAS Interproscan
CC GO:0005654 nucleoplasm IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006281 DNA repair IMP Interproscan
BP GO:0007275 multicellular organism development IMP Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0030029 actin filament-based process TAS Interproscan
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009960 endosperm development IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010064 embryonic shoot morphogenesis IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016929 SUMO-specific protease activity IEP HCCA
MF GO:0019107 myristoyltransferase activity IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0022619 generative cell differentiation IEP HCCA
MF GO:0030371 translation repressor activity IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
BP GO:0034635 glutathione transport IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0042939 tripeptide transport IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0044770 cell cycle phase transition IEP HCCA
BP GO:0044772 mitotic cell cycle phase transition IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0044843 cell cycle G1/S phase transition IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070628 proteasome binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0072337 modified amino acid transport IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:2000036 regulation of stem cell population maintenance IEP HCCA
InterPro domains Description Start Stop
IPR004000 Actin 559 715
IPR004000 Actin 21 217
PLAZA 3.0 Dicots AT3G12380