AT3G12560

Description : TRF-like 9

Gene families : OG_01_0000896 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000896_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G12560
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp1g07040.1	No alias	transcription factor (MYB-related)	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03703.1	No alias	telomeric dsDNA-binding protein	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008301	DNA binding, bending	IDA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
MF	GO:0042162	telomeric DNA binding	IDA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000255	allantoin metabolic process	IEP	HCCA
BP	GO:0000256	allantoin catabolic process	IEP	HCCA
BP	GO:0002240	response to molecule of oomycetes origin	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004848	ureidoglycolate hydrolase activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
BP	GO:0006144	purine nucleobase metabolic process	IEP	HCCA
BP	GO:0006145	purine nucleobase catabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009626	plant-type hypersensitive response	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0010135	ureide metabolic process	IEP	HCCA
BP	GO:0010136	ureide catabolic process	IEP	HCCA
BP	GO:0012501	programmed cell death	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0030658	transport vesicle membrane	IEP	HCCA
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	HCCA
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	HCCA
CC	GO:0030662	coated vesicle membrane	IEP	HCCA
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031965	nuclear membrane	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
CC	GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	IEP	HCCA
BP	GO:0043605	cellular amide catabolic process	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0046113	nucleobase catabolic process	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	HCCA
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0080050	regulation of seed development	IEP	HCCA
BP	GO:2000034	regulation of seed maturation	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA
BP	GO:2000693	positive regulation of seed maturation	IEP	HCCA

No InterPro domains available for this sequence

External Links

PLAZA 3.0 Dicots	AT3G12560

AT3G12560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation