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  5. AT3G12640

AT3G12640


Description : RNA binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0007108 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12640
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Mp2g18400.1 No alias poly(A) RNA polymerase regulatory protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004758 serine C-palmitoyltransferase activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005673 transcription factor TFIIE complex IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007135 meiosis II IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010262 somatic embryogenesis IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010450 inflorescence meristem growth IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016408 C-acyltransferase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
MF GO:0016454 C-palmitoyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0031099 regeneration IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
CC GO:0035101 FACT complex IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046592 polyamine oxidase activity IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048448 stamen morphogenesis IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048832 specification of plant organ number IEP HCCA
BP GO:0048833 specification of floral organ number IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0055046 microgametogenesis IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061983 meiosis II cell cycle process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901989 positive regulation of cell cycle phase transition IEP HCCA
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2000011 regulation of adaxial/abaxial pattern formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 482 550
IPR002483 PWI_dom 23 86
PLAZA 3.0 Dicots AT3G12640