Coexpression cluster: Cluster_145 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 25.14% (45/179) 1.54 0.0 0.0
GO:0043170 macromolecule metabolic process 36.31% (65/179) 1.14 0.0 0.0
GO:0090304 nucleic acid metabolic process 21.79% (39/179) 1.71 0.0 0.0
GO:0006807 nitrogen compound metabolic process 39.11% (70/179) 1.08 0.0 0.0
GO:0016071 mRNA metabolic process 9.5% (17/179) 2.92 0.0 0.0
GO:0006397 mRNA processing 6.7% (12/179) 3.88 0.0 0.0
GO:0008380 RNA splicing 8.38% (15/179) 3.08 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 27.93% (50/179) 1.32 0.0 0.0
GO:0000398 mRNA splicing, via spliceosome 5.59% (10/179) 4.02 0.0 0.0
GO:0046483 heterocycle metabolic process 26.26% (47/179) 1.38 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 28.49% (51/179) 1.27 0.0 0.0
GO:0000375 RNA splicing, via transesterification reactions 5.59% (10/179) 3.87 0.0 0.0
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.59% (10/179) 3.87 0.0 0.0
GO:0005634 nucleus 55.31% (99/179) 0.72 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 26.26% (47/179) 1.29 0.0 0.0
GO:0044238 primary metabolic process 42.46% (76/179) 0.89 0.0 0.0
GO:0048522 positive regulation of cellular process 11.73% (21/179) 2.22 0.0 0.0
GO:0032501 multicellular organismal process 19.55% (35/179) 1.55 0.0 1e-06
GO:0009791 post-embryonic development 10.61% (19/179) 2.34 0.0 1e-06
GO:0044260 cellular macromolecule metabolic process 28.49% (51/179) 1.19 0.0 1e-06
GO:0008152 metabolic process 48.6% (87/179) 0.77 0.0 1e-06
GO:0048518 positive regulation of biological process 12.85% (23/179) 2.01 0.0 1e-06
GO:0071704 organic substance metabolic process 45.81% (82/179) 0.8 0.0 1e-06
GO:0010605 negative regulation of macromolecule metabolic process 10.61% (19/179) 2.26 0.0 1e-06
GO:0006259 DNA metabolic process 10.06% (18/179) 2.32 0.0 1e-06
GO:0044237 cellular metabolic process 44.13% (79/179) 0.8 0.0 2e-06
GO:0009892 negative regulation of metabolic process 10.61% (19/179) 2.19 0.0 2e-06
GO:0007275 multicellular organism development 12.29% (22/179) 1.96 0.0 3e-06
GO:0005488 binding 38.55% (69/179) 0.87 0.0 3e-06
GO:0009987 cellular process 55.87% (100/179) 0.61 0.0 4e-06
GO:2000241 regulation of reproductive process 8.38% (15/179) 2.44 0.0 6e-06
GO:0006396 RNA processing 11.17% (20/179) 1.98 0.0 8e-06
GO:0003723 RNA binding 8.94% (16/179) 2.27 0.0 1.1e-05
GO:0051239 regulation of multicellular organismal process 8.94% (16/179) 2.25 0.0 1.2e-05
GO:0010629 negative regulation of gene expression 7.82% (14/179) 2.46 0.0 1.2e-05
GO:0008284 positive regulation of cell population proliferation 3.91% (7/179) 3.91 0.0 1.6e-05
GO:0016607 nuclear speck 2.79% (5/179) 4.95 1e-06 1.9e-05
GO:0048580 regulation of post-embryonic development 8.38% (15/179) 2.29 1e-06 1.9e-05
GO:0048519 negative regulation of biological process 13.41% (24/179) 1.67 1e-06 2e-05
GO:0009909 regulation of flower development 7.26% (13/179) 2.5 1e-06 2.1e-05
GO:2000026 regulation of multicellular organismal development 8.38% (15/179) 2.27 1e-06 2.1e-05
GO:0022414 reproductive process 19.55% (35/179) 1.28 1e-06 2.6e-05
GO:0016070 RNA metabolic process 14.53% (26/179) 1.54 1e-06 3.2e-05
GO:0048831 regulation of shoot system development 7.26% (13/179) 2.43 1e-06 3.2e-05
GO:1901363 heterocyclic compound binding 22.91% (41/179) 1.12 1e-06 4.1e-05
GO:0097159 organic cyclic compound binding 22.91% (41/179) 1.11 2e-06 4.7e-05
GO:0048856 anatomical structure development 16.76% (30/179) 1.35 2e-06 5.6e-05
GO:0034655 nucleobase-containing compound catabolic process 4.47% (8/179) 3.22 3e-06 7.3e-05
GO:0005515 protein binding 17.88% (32/179) 1.26 3e-06 8.9e-05
GO:0050793 regulation of developmental process 10.61% (19/179) 1.75 4e-06 0.000113
GO:0000956 nuclear-transcribed mRNA catabolic process 3.91% (7/179) 3.41 5e-06 0.000123
GO:0006402 mRNA catabolic process 3.91% (7/179) 3.39 5e-06 0.000129
GO:0009057 macromolecule catabolic process 8.94% (16/179) 1.93 5e-06 0.000139
GO:0009416 response to light stimulus 12.29% (22/179) 1.54 7e-06 0.000179
GO:0048573 photoperiodism, flowering 4.47% (8/179) 3.01 7e-06 0.00018
GO:0009630 gravitropism 4.47% (8/179) 3.0 8e-06 0.000182
GO:0044265 cellular macromolecule catabolic process 7.82% (14/179) 2.06 8e-06 0.000182
GO:0045893 positive regulation of transcription, DNA-templated 7.26% (13/179) 2.15 8e-06 0.000184
GO:0051254 positive regulation of RNA metabolic process 7.26% (13/179) 2.15 8e-06 0.000184
GO:1902680 positive regulation of RNA biosynthetic process 7.26% (13/179) 2.15 8e-06 0.000184
GO:1903508 positive regulation of nucleic acid-templated transcription 7.26% (13/179) 2.15 8e-06 0.000184
GO:0006401 RNA catabolic process 3.91% (7/179) 3.27 9e-06 0.000188
GO:0019538 protein metabolic process 20.11% (36/179) 1.1 1e-05 0.000197
GO:0009790 embryo development 7.82% (14/179) 2.03 1e-05 0.000199
GO:0009793 embryo development ending in seed dormancy 7.82% (14/179) 2.03 1e-05 0.000199
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 7.26% (13/179) 2.14 9e-06 0.000201
GO:0009648 photoperiodism 4.47% (8/179) 2.95 1e-05 0.000205
GO:0060255 regulation of macromolecule metabolic process 18.99% (34/179) 1.13 1.1e-05 0.000215
GO:0009629 response to gravity 4.47% (8/179) 2.93 1.1e-05 0.000218
GO:0005829 cytosol 13.97% (25/179) 1.37 1.2e-05 0.000234
GO:0042127 regulation of cell population proliferation 3.91% (7/179) 3.2 1.2e-05 0.000235
GO:0009606 tropism 4.47% (8/179) 2.9 1.3e-05 0.000246
GO:0016604 nuclear body 2.79% (5/179) 4.04 1.3e-05 0.000247
GO:0010557 positive regulation of macromolecule biosynthetic process 7.26% (13/179) 2.07 1.5e-05 0.000275
GO:0003676 nucleic acid binding 17.32% (31/179) 1.18 1.5e-05 0.000277
GO:0006305 DNA alkylation 4.47% (8/179) 2.85 1.6e-05 0.000289
GO:0006306 DNA methylation 4.47% (8/179) 2.85 1.6e-05 0.000289
GO:0051173 positive regulation of nitrogen compound metabolic process 7.26% (13/179) 2.05 1.8e-05 0.000303
GO:0031328 positive regulation of cellular biosynthetic process 7.26% (13/179) 2.05 1.8e-05 0.000304
GO:0044728 DNA methylation or demethylation 4.47% (8/179) 2.84 1.8e-05 0.000306
GO:0009314 response to radiation 12.29% (22/179) 1.45 1.9e-05 0.00031
GO:0006304 DNA modification 4.47% (8/179) 2.83 1.9e-05 0.000311
GO:0005730 nucleolus 5.59% (10/179) 2.42 2e-05 0.00032
GO:0035196 production of miRNAs involved in gene silencing by miRNA 3.91% (7/179) 3.08 2.1e-05 0.000332
GO:0010090 trichome morphogenesis 3.91% (7/179) 3.06 2.3e-05 0.000363
GO:0010604 positive regulation of macromolecule metabolic process 7.26% (13/179) 2.01 2.3e-05 0.000363
GO:0031325 positive regulation of cellular metabolic process 7.26% (13/179) 2.0 2.6e-05 0.000407
GO:0019222 regulation of metabolic process 20.11% (36/179) 1.03 2.7e-05 0.000415
GO:0010468 regulation of gene expression 17.32% (31/179) 1.13 2.9e-05 0.000438
GO:0009891 positive regulation of biosynthetic process 7.82% (14/179) 1.88 3e-05 0.000454
GO:0030422 production of siRNA involved in RNA interference 3.91% (7/179) 2.95 3.7e-05 0.000546
GO:0016567 protein ubiquitination 4.47% (8/179) 2.69 3.8e-05 0.000554
GO:0006464 cellular protein modification process 13.41% (24/179) 1.31 3.9e-05 0.000564
GO:0036211 protein modification process 13.41% (24/179) 1.31 3.9e-05 0.000564
GO:0031050 dsRNA processing 3.91% (7/179) 2.92 4.2e-05 0.000592
GO:0070918 production of small RNA involved in gene silencing by RNA 3.91% (7/179) 2.92 4.2e-05 0.000592
GO:0016572 histone phosphorylation 2.79% (5/179) 3.64 5.2e-05 0.000709
GO:0009893 positive regulation of metabolic process 7.82% (14/179) 1.81 5.1e-05 0.00071
GO:0048608 reproductive structure development 4.47% (8/179) 2.62 5.2e-05 0.000712
GO:0043412 macromolecule modification 15.08% (27/179) 1.18 5.7e-05 0.000768
GO:0022402 cell cycle process 7.26% (13/179) 1.88 5.9e-05 0.000781
GO:0009640 photomorphogenesis 4.47% (8/179) 2.56 7.1e-05 0.00094
GO:0032446 protein modification by small protein conjugation 4.47% (8/179) 2.55 7.4e-05 0.000962
GO:0046700 heterocycle catabolic process 5.03% (9/179) 2.33 8.3e-05 0.001081
GO:0009628 response to abiotic stimulus 19.55% (35/179) 0.97 8.6e-05 0.001096
GO:0044270 cellular nitrogen compound catabolic process 5.03% (9/179) 2.32 8.8e-05 0.0011
GO:0019439 aromatic compound catabolic process 5.03% (9/179) 2.33 8.6e-05 0.001101
GO:0032502 developmental process 22.91% (41/179) 0.87 8.8e-05 0.001104
GO:0050896 response to stimulus 32.96% (59/179) 0.67 9.3e-05 0.001145
GO:0000278 mitotic cell cycle 3.91% (7/179) 2.74 9.3e-05 0.001147
GO:0009056 catabolic process 13.97% (25/179) 1.19 9.9e-05 0.001184
GO:0051168 nuclear export 2.79% (5/179) 3.44 9.9e-05 0.001191
GO:1901361 organic cyclic compound catabolic process 5.03% (9/179) 2.3 9.8e-05 0.001193
GO:0016570 histone modification 5.59% (10/179) 2.14 0.000103 0.001222
GO:0016571 histone methylation 5.03% (9/179) 2.29 0.000107 0.001248
GO:0006479 protein methylation 5.03% (9/179) 2.27 0.000115 0.001327
GO:0008213 protein alkylation 5.03% (9/179) 2.27 0.000115 0.001327
GO:0050789 regulation of biological process 27.93% (50/179) 0.74 0.000117 0.001335
GO:0032259 methylation 6.7% (12/179) 1.88 0.000119 0.001338
GO:0043414 macromolecule methylation 6.7% (12/179) 1.88 0.000119 0.001338
GO:0035061 interchromatin granule 1.12% (2/179) 6.69 0.000124 0.001374
GO:0006611 protein export from nucleus 1.12% (2/179) 6.69 0.000124 0.001374
GO:0044248 cellular catabolic process 11.73% (21/179) 1.3 0.000131 0.001438
GO:0070647 protein modification by small protein conjugation or removal 5.03% (9/179) 2.23 0.000142 0.001539
GO:0000151 ubiquitin ligase complex 3.91% (7/179) 2.61 0.000161 0.001734
GO:0043228 non-membrane-bounded organelle 7.82% (14/179) 1.64 0.000179 0.001883
GO:0043232 intracellular non-membrane-bounded organelle 7.82% (14/179) 1.64 0.000179 0.001883
GO:0003006 developmental process involved in reproduction 14.53% (26/179) 1.11 0.000178 0.001898
GO:0009615 response to virus 3.91% (7/179) 2.58 0.000185 0.001928
GO:0009639 response to red or far red light 5.59% (10/179) 2.0 0.000228 0.002361
GO:0006997 nucleus organization 2.79% (5/179) 3.17 0.000245 0.002518
GO:0006325 chromatin organization 4.47% (8/179) 2.25 0.000307 0.003133
GO:0005635 nuclear envelope 2.23% (4/179) 3.63 0.00031 0.003138
GO:0016043 cellular component organization 16.76% (30/179) 0.95 0.000352 0.003543
GO:0009933 meristem structural organization 2.79% (5/179) 3.02 0.000389 0.003879
GO:1901575 organic substance catabolic process 11.73% (21/179) 1.18 0.000394 0.003903
GO:0050826 response to freezing 2.79% (5/179) 3.01 0.000408 0.003983
GO:0043687 post-translational protein modification 2.79% (5/179) 3.01 0.000408 0.003983
GO:0006913 nucleocytoplasmic transport 3.35% (6/179) 2.65 0.000417 0.004011
GO:0051169 nuclear transport 3.35% (6/179) 2.65 0.000417 0.004011
GO:0009605 response to external stimulus 14.53% (26/179) 1.02 0.00043 0.00411
GO:0065007 biological regulation 29.05% (52/179) 0.64 0.000465 0.004407
GO:0007000 nucleolus organization 1.68% (3/179) 4.27 0.000488 0.004599
GO:0010051 xylem and phloem pattern formation 2.79% (5/179) 2.95 0.000492 0.004604
GO:0009616 RNAi-mediated antiviral immune response 2.79% (5/179) 2.94 0.000515 0.004721
GO:0048532 anatomical structure arrangement 2.79% (5/179) 2.94 0.000515 0.004721
GO:0006312 mitotic recombination 2.23% (4/179) 3.44 0.000513 0.004765
GO:0019915 lipid storage 2.79% (5/179) 2.92 0.000539 0.004905
GO:0007049 cell cycle 3.91% (7/179) 2.3 0.000583 0.00527
GO:0031461 cullin-RING ubiquitin ligase complex 3.35% (6/179) 2.54 0.000609 0.005469
GO:0031047 gene silencing by RNA 3.35% (6/179) 2.53 0.000629 0.005614
GO:0140535 intracellular protein-containing complex 4.47% (8/179) 2.07 0.000691 0.00612
GO:0000280 nuclear division 2.23% (4/179) 3.29 0.000751 0.006608
GO:0034968 histone lysine methylation 3.91% (7/179) 2.23 0.000798 0.00698
GO:0045087 innate immune response 3.91% (7/179) 2.22 0.000818 0.007067
GO:0018022 peptidyl-lysine methylation 3.91% (7/179) 2.22 0.000818 0.007067
GO:0048229 gametophyte development 3.91% (7/179) 2.21 0.000839 0.0072
GO:0033043 regulation of organelle organization 3.35% (6/179) 2.45 0.000864 0.007362
GO:0010050 vegetative phase change 2.23% (4/179) 3.23 0.000895 0.007485
GO:0009756 carbohydrate mediated signaling 2.79% (5/179) 2.76 0.000893 0.007514
GO:0010182 sugar mediated signaling pathway 2.79% (5/179) 2.76 0.000893 0.007514
GO:0051235 maintenance of location 2.79% (5/179) 2.75 0.000928 0.007671
GO:0006310 DNA recombination 3.91% (7/179) 2.19 0.000927 0.007706
GO:0006955 immune response 3.91% (7/179) 2.18 0.00095 0.0078
GO:0070828 heterochromatin organization 3.35% (6/179) 2.41 0.000974 0.007952
GO:0043229 intracellular organelle 72.07% (129/179) 0.25 0.00098 0.007955
GO:0043226 organelle 72.07% (129/179) 0.25 0.001 0.008064
GO:0051567 histone H3-K9 methylation 3.35% (6/179) 2.37 0.001127 0.008984
GO:0061647 histone H3-K9 modification 3.35% (6/179) 2.37 0.001127 0.008984
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 2.79% (5/179) 2.67 0.001166 0.009235
GO:0006468 protein phosphorylation 5.59% (10/179) 1.68 0.001221 0.00962
GO:0044267 cellular protein metabolic process 13.41% (24/179) 0.97 0.001256 0.009835
GO:1901564 organonitrogen compound metabolic process 22.91% (41/179) 0.68 0.001384 0.010712
GO:0022412 cellular process involved in reproduction in multicellular organism 3.35% (6/179) 2.31 0.00141 0.010729
GO:0000911 cytokinesis by cell plate formation 3.35% (6/179) 2.31 0.00141 0.010729
GO:0006346 DNA methylation-dependent heterochromatin assembly 2.79% (5/179) 2.62 0.001395 0.01074
GO:1990234 transferase complex 3.91% (7/179) 2.09 0.001382 0.010761
GO:0071840 cellular component organization or biogenesis 16.76% (30/179) 0.83 0.001435 0.010863
GO:0140513 nuclear protein-containing complex 3.35% (6/179) 2.3 0.001449 0.010901
GO:0000910 cytokinesis 3.35% (6/179) 2.28 0.00157 0.011683
GO:0043231 intracellular membrane-bounded organelle 70.95% (127/179) 0.24 0.001563 0.011694
GO:0043227 membrane-bounded organelle 70.95% (127/179) 0.24 0.001593 0.011787
GO:0006996 organelle organization 10.06% (18/179) 1.12 0.001695 0.012408
GO:0006508 proteolysis 7.82% (14/179) 1.31 0.001687 0.012419
GO:0018205 peptidyl-lysine modification 4.47% (8/179) 1.86 0.001776 0.012932
GO:0016310 phosphorylation 6.7% (12/179) 1.43 0.001803 0.01306
GO:1901136 carbohydrate derivative catabolic process 1.68% (3/179) 3.61 0.001904 0.013717
GO:0009560 embryo sac egg cell differentiation 2.79% (5/179) 2.48 0.002081 0.014913
GO:0048869 cellular developmental process 6.7% (12/179) 1.4 0.00218 0.015538
GO:0009908 flower development 2.23% (4/179) 2.78 0.002813 0.019941
GO:0098542 defense response to other organism 7.82% (14/179) 1.22 0.002999 0.021148
GO:0051607 defense response to virus 2.79% (5/179) 2.35 0.003072 0.021443
GO:0140546 defense response to symbiont 2.79% (5/179) 2.35 0.003072 0.021443
GO:0009910 negative regulation of flower development 1.68% (3/179) 3.36 0.003099 0.021516
GO:0016441 posttranscriptional gene silencing 2.79% (5/179) 2.33 0.003342 0.023087
GO:0048285 organelle fission 2.23% (4/179) 2.7 0.003418 0.023491
GO:0008150 biological_process 83.24% (149/179) 0.16 0.003592 0.024562
GO:0010162 seed dormancy process 2.79% (5/179) 2.3 0.003629 0.024687
GO:0022611 dormancy process 2.79% (5/179) 2.29 0.003728 0.025236
GO:0031323 regulation of cellular metabolic process 14.53% (26/179) 0.8 0.003939 0.026529
GO:0051301 cell division 2.23% (4/179) 2.64 0.003962 0.026551
GO:0008283 cell population proliferation 2.79% (5/179) 2.26 0.004038 0.026926
GO:0050794 regulation of cellular process 21.79% (39/179) 0.61 0.004093 0.027159
GO:2000243 positive regulation of reproductive process 1.68% (3/179) 3.21 0.00418 0.027469
GO:0006366 transcription by RNA polymerase II 1.68% (3/179) 3.21 0.00418 0.027469
GO:0045010 actin nucleation 2.23% (4/179) 2.61 0.004255 0.02782
GO:0090567 reproductive shoot system development 2.23% (4/179) 2.57 0.00472 0.030278
GO:0018193 peptidyl-amino acid modification 4.47% (8/179) 1.62 0.004753 0.030346
GO:0009845 seed germination 2.79% (5/179) 2.21 0.004712 0.030368
GO:0009574 preprophase band 1.12% (2/179) 4.27 0.00471 0.030501
GO:0055028 cortical microtubule 1.12% (2/179) 4.27 0.00471 0.030501
GO:0007267 cell-cell signaling 2.23% (4/179) 2.56 0.004883 0.031025
GO:0023052 signaling 2.23% (4/179) 2.54 0.005049 0.031931
GO:0016579 protein deubiquitination 1.68% (3/179) 3.1 0.005192 0.032526
GO:2000242 negative regulation of reproductive process 1.68% (3/179) 3.1 0.005192 0.032526
GO:0005881 cytoplasmic microtubule 1.12% (2/179) 4.18 0.005315 0.033146
GO:0031507 heterochromatin assembly 2.79% (5/179) 2.16 0.005462 0.033906
GO:0006950 response to stress 20.11% (36/179) 0.62 0.005586 0.034513
GO:0000702 oxidized base lesion DNA N-glycosylase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0031055 chromatin remodeling at centromere 0.56% (1/179) 7.27 0.006473 0.035442
GO:0031497 chromatin assembly 0.56% (1/179) 7.27 0.006473 0.035442
GO:0031508 pericentric heterochromatin assembly 0.56% (1/179) 7.27 0.006473 0.035442
GO:0140462 pericentric heterochromatin organization 0.56% (1/179) 7.27 0.006473 0.035442
GO:0047312 L-phenylalanine:pyruvate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0050048 L-leucine:2-oxoglutarate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0070546 L-phenylalanine aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0080098 L-tyrosine:pyruvate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0080099 L-methionine:2-oxoglutarate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0080100 L-glutamine:2-oxoglutarate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0006218 uridine catabolic process 0.56% (1/179) 7.27 0.006473 0.035442
GO:0045437 uridine nucleosidase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0050263 ribosylpyrimidine nucleosidase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0072585 xanthosine nucleotidase activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0000245 spliceosomal complex assembly 0.56% (1/179) 7.27 0.006473 0.035442
GO:0032153 cell division site 0.56% (1/179) 7.27 0.006473 0.035442
GO:0034720 histone H3-K4 demethylation 0.56% (1/179) 7.27 0.006473 0.035442
GO:0047681 aryl-alcohol dehydrogenase (NADP+) activity 0.56% (1/179) 7.27 0.006473 0.035442
GO:0035019 somatic stem cell population maintenance 0.56% (1/179) 7.27 0.006473 0.035442
GO:1902183 regulation of shoot apical meristem development 0.56% (1/179) 7.27 0.006473 0.035442
GO:0006281 DNA repair 3.35% (6/179) 1.9 0.005784 0.035577
GO:0048582 positive regulation of post-embryonic development 1.68% (3/179) 2.97 0.006646 0.035808
GO:0048571 long-day photoperiodism 1.12% (2/179) 4.02 0.006627 0.035848
GO:0005643 nuclear pore 1.12% (2/179) 4.02 0.006627 0.035848
GO:0016569 obsolete covalent chromatin modification 1.12% (2/179) 4.02 0.006627 0.035848
GO:0007389 pattern specification process 3.91% (7/179) 1.67 0.006758 0.036124
GO:0009555 pollen development 2.79% (5/179) 2.09 0.00674 0.036172
GO:0048574 long-day photoperiodism, flowering 1.12% (2/179) 4.1 0.005954 0.036292
GO:0000902 cell morphogenesis 5.59% (10/179) 1.33 0.006824 0.036332
GO:0010267 production of ta-siRNAs involved in RNA interference 2.23% (4/179) 2.48 0.005938 0.036356
GO:0045814 negative regulation of gene expression, epigenetic 2.79% (5/179) 2.13 0.006007 0.036448
GO:0032991 protein-containing complex 9.5% (17/179) 0.95 0.00712 0.03761
GO:0006260 DNA replication 3.35% (6/179) 1.83 0.007095 0.037626
GO:1902494 catalytic complex 5.03% (9/179) 1.41 0.007163 0.037688
GO:2000112 regulation of cellular macromolecule biosynthetic process 12.29% (22/179) 0.81 0.007348 0.037778
GO:0010556 regulation of macromolecule biosynthetic process 12.29% (22/179) 0.81 0.007391 0.037853
GO:0030154 cell differentiation 5.03% (9/179) 1.41 0.007335 0.037857
GO:0006406 mRNA export from nucleus 1.68% (3/179) 2.93 0.007289 0.037907
GO:0051028 mRNA transport 1.68% (3/179) 2.93 0.007289 0.037907
GO:0051603 proteolysis involved in cellular protein catabolic process 4.47% (8/179) 1.52 0.007237 0.03793
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 1.12% (2/179) 3.95 0.007332 0.037984
GO:0043207 response to external biotic stimulus 9.5% (17/179) 0.95 0.007477 0.038148
GO:0000904 cell morphogenesis involved in differentiation 4.47% (8/179) 1.55 0.00632 0.038175
GO:0009607 response to biotic stimulus 9.5% (17/179) 0.94 0.007581 0.038246
GO:0003002 regionalization 2.79% (5/179) 2.05 0.007534 0.038297
GO:0006952 defense response 8.94% (16/179) 0.98 0.007576 0.038366
GO:0004672 protein kinase activity 5.03% (9/179) 1.39 0.007872 0.03942
GO:0002376 immune system process 3.91% (7/179) 1.63 0.007868 0.039546
GO:0048316 seed development 1.68% (3/179) 2.88 0.007967 0.039747
GO:0009855 determination of bilateral symmetry 2.23% (4/179) 2.34 0.008246 0.040985
GO:0010638 positive regulation of organelle organization 1.68% (3/179) 2.86 0.00832 0.04105
GO:0051130 positive regulation of cellular component organization 1.68% (3/179) 2.86 0.00832 0.04105
GO:0009799 specification of symmetry 2.23% (4/179) 2.33 0.008481 0.041692
GO:0019219 regulation of nucleobase-containing compound metabolic process 11.73% (21/179) 0.81 0.008534 0.041801
GO:0019827 stem cell population maintenance 1.68% (3/179) 2.83 0.008681 0.042216
GO:0098727 maintenance of cell number 1.68% (3/179) 2.83 0.008681 0.042216
GO:0051707 response to other organism 8.94% (16/179) 0.96 0.008867 0.042808
GO:0042393 histone binding 1.12% (2/179) 3.81 0.008839 0.042827
GO:0051128 regulation of cellular component organization 3.35% (6/179) 1.76 0.008907 0.042848
GO:0051240 positive regulation of multicellular organismal process 1.68% (3/179) 2.81 0.009052 0.043238
GO:0009889 regulation of biosynthetic process 12.85% (23/179) 0.76 0.009034 0.043308
GO:0044419 biological process involved in interspecies interaction between organisms 8.94% (16/179) 0.95 0.009377 0.044634
GO:0016246 RNA interference 1.68% (3/179) 2.77 0.009821 0.045305
GO:0048439 flower morphogenesis 1.68% (3/179) 2.77 0.009821 0.045305
GO:0006405 RNA export from nucleus 1.68% (3/179) 2.77 0.009821 0.045305
GO:0050657 nucleic acid transport 1.68% (3/179) 2.77 0.009821 0.045305
GO:0050658 RNA transport 1.68% (3/179) 2.77 0.009821 0.045305
GO:0051236 establishment of RNA localization 1.68% (3/179) 2.77 0.009821 0.045305
GO:0006995 cellular response to nitrogen starvation 1.12% (2/179) 3.75 0.00964 0.04572
GO:0031326 regulation of cellular biosynthetic process 12.29% (22/179) 0.77 0.009687 0.045786
GO:0033044 regulation of chromosome organization 2.23% (4/179) 2.27 0.009722 0.045787
GO:0040029 regulation of gene expression, epigenetic 2.79% (5/179) 1.94 0.0101 0.046433
GO:0010073 meristem maintenance 1.68% (3/179) 2.75 0.01022 0.046823
GO:0033554 cellular response to stress 7.82% (14/179) 1.01 0.010486 0.047881
GO:0051604 protein maturation 1.68% (3/179) 2.73 0.010627 0.048361
GO:0006796 phosphate-containing compound metabolic process 10.61% (19/179) 0.83 0.010955 0.049516
GO:0006261 DNA-dependent DNA replication 2.79% (5/179) 1.91 0.010931 0.049576
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_10 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_11 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_21 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_28 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_32 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_38 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_43 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_55 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_72 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_76 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_80 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_87 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_89 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_90 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_94 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_101 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_114 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_115 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_125 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_131 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_139 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_140 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_169 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_189 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_199 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_221 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_226 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_242 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_255 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_258 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_9 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_18 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_71 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_83 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_88 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_91 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_116 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_128 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_165 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_5 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_29 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_33 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_55 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_68 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_71 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_80 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_88 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_125 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_127 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_128 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_130 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_136 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_146 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_158 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_4 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_17 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_25 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_29 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_101 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_110 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_114 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_134 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_138 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_141 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_143 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_146 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_148 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_149 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_154 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_160 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_162 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_163 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_169 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_191 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_212 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_226 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_244 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_258 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_277 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_282 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_288 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_295 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_296 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_304 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_305 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_22 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_39 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_76 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_87 0.031 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_93 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_110 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_117 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_132 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_147 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_151 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_162 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_177 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (179) (download table)

InterPro Domains

GO Terms

Family Terms