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  5. AT3G13220

AT3G13220


Description : ABC-2 type transporter family protein


Gene families : OG_01_0000595 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13220
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AT1G31770 No alias ATP-binding cassette 14 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G27420 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_25800V3.1 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0010152 pollen maturation IMP Interproscan
BP GO:0010584 pollen exine formation IMP Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005788 endoplasmic reticulum lumen IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009820 alkaloid metabolic process IEP HCCA
BP GO:0009821 alkaloid biosynthetic process IEP HCCA
BP GO:0009943 adaxial/abaxial axis specification IEP HCCA
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP HCCA
MF GO:0015271 outward rectifier potassium channel activity IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016621 cinnamoyl-CoA reductase activity IEP HCCA
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0018685 alkane 1-monooxygenase activity IEP HCCA
BP GO:0030638 polyketide metabolic process IEP HCCA
BP GO:0030639 polyketide biosynthetic process IEP HCCA
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0035337 fatty-acyl-CoA metabolic process IEP HCCA
BP GO:0035384 thioester biosynthetic process IEP HCCA
BP GO:0035445 borate transmembrane transport IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0046713 borate transport IEP HCCA
MF GO:0046715 active borate transmembrane transporter activity IEP HCCA
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048658 anther wall tapetum development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
MF GO:0050734 hydroxycinnamoyltransferase activity IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051791 medium-chain fatty acid metabolic process IEP HCCA
BP GO:0051792 medium-chain fatty acid biosynthetic process IEP HCCA
BP GO:0071616 acyl-CoA biosynthetic process IEP HCCA
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP HCCA
MF GO:0080072 spermidine:sinapoyl CoA N-acyltransferase activity IEP HCCA
MF GO:0080073 spermidine:coumaroyl CoA N-acyltransferase activity IEP HCCA
MF GO:0080074 spermidine:caffeoyl CoA N-acyltransferase activity IEP HCCA
MF GO:0080075 spermidine:feruloyl CoA N-acyltransferase activity IEP HCCA
BP GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process IEP HCCA
BP GO:0080110 sporopollenin biosynthetic process IEP HCCA
MF GO:0090439 tetraketide alpha-pyrone synthase activity IEP HCCA
BP GO:0090691 formation of plant organ boundary IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1900150 regulation of defense response to fungus IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 107 257
IPR013525 ABC_2_trans 415 623
PLAZA 3.0 Dicots AT3G13220