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  5. AT3G13235

AT3G13235


Description : ubiquitin family protein


Gene families : OG_01_0005306 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13235
Cluster HCCA: Cluster_152


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0004835 tubulin-tyrosine ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005527 macrolide binding IEP HCCA
MF GO:0005528 FK506 binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008327 methyl-CpG binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008469 histone-arginine N-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
MF GO:0010428 methyl-CpNpG binding IEP HCCA
MF GO:0010429 methyl-CpNpN binding IEP HCCA
CC GO:0010445 nuclear dicing body IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010589 leaf proximal/distal pattern formation IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016273 arginine N-methyltransferase activity IEP HCCA
MF GO:0016274 protein-arginine N-methyltransferase activity IEP HCCA
MF GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018195 peptidyl-arginine modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0018216 peptidyl-arginine methylation IEP HCCA
BP GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine IEP HCCA
BP GO:0031054 pre-miRNA processing IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0031445 regulation of heterochromatin assembly IEP HCCA
BP GO:0031453 positive regulation of heterochromatin assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0034969 histone arginine methylation IEP HCCA
BP GO:0034970 histone H3-R2 methylation IEP HCCA
BP GO:0034971 histone H3-R17 methylation IEP HCCA
BP GO:0034972 histone H3-R26 methylation IEP HCCA
MF GO:0035198 miRNA binding IEP HCCA
MF GO:0035241 protein-arginine omega-N monomethyltransferase activity IEP HCCA
MF GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity IEP HCCA
BP GO:0035246 peptidyl-arginine N-methylation IEP HCCA
BP GO:0035247 peptidyl-arginine omega-N-methylation IEP HCCA
BP GO:0035279 mRNA cleavage involved in gene silencing by miRNA IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0044089 positive regulation of cellular component biogenesis IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0051568 histone H3-K4 methylation IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
BP GO:0120261 regulation of heterochromatin organization IEP HCCA
BP GO:0120263 positive regulation of heterochromatin organization IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
BP GO:1902275 regulation of chromatin organization IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1905269 positive regulation of chromatin organization IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2001252 positive regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR019103 Peptidase_aspartic_DDI1-type 179 301
IPR015940 UBA 377 410
IPR000626 Ubiquitin-like_dom 3 72
PLAZA 3.0 Dicots AT3G13235