AT3G17280

Description : F-box and associated interaction domains-containing protein

Gene families : OG_01_0000007 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G17280
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AT1G27490	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G32140	No alias	F-box family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65990	No alias	type 2 peroxiredoxin-related / thiol specific...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66490	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G24510	No alias	F-box associated ubiquitination effector family protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G33655	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G38590	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G39355	No alias	No description available	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03405	No alias	F-box associated ubiquitination effector family protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G04250	No alias	F-box associated ubiquitination effector family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13680	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17320	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17480	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17500	No alias	F-box family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17530	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17540	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17560	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G17570	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19470	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19560	No alias	F-box family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20030	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G20690	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G21165	No alias	No description available	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22350	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22700	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22730	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22770	No alias	F-box associated ubiquitination effector family protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G22870	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G24580	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49520	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G09870	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G10740	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33290	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G36730	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G36820	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41490	No alias	F-box associated ubiquitination effector family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41510	No alias	F-box and associated interaction domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G47300	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	HCCA
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006469	negative regulation of protein kinase activity	IEP	HCCA
MF	GO:0008192	RNA guanylyltransferase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0010214	seed coat development	IEP	HCCA
BP	GO:0010219	regulation of vernalization response	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0017077	oxidative phosphorylation uncoupler activity	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	HCCA
BP	GO:0033673	negative regulation of kinase activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0042326	negative regulation of phosphorylation	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048442	sepal development	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
BP	GO:0048832	specification of plant organ number	IEP	HCCA
BP	GO:0048833	specification of floral organ number	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051348	negative regulation of transferase activity	IEP	HCCA
MF	GO:0070568	guanylyltransferase activity	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0080120	CAAX-box protein maturation	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:1904030	negative regulation of cyclin-dependent protein kinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	3	47
IPR006527	F-box-assoc_dom_typ1	197	373

External Links

PLAZA 3.0 Dicots	AT3G17280

AT3G17280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation