AT3G20550


Description : SMAD/FHA domain-containing protein


Gene families : OG_01_0004535 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004535_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G20550
Cluster HCCA: Cluster_145


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Interproscan
MF GO:0003674 molecular_function ND Interproscan
MF GO:0003723 RNA binding IMP Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0008283 cell population proliferation IMP Interproscan
BP GO:0008284 positive regulation of cell population proliferation RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009933 meristem structural organization RCA Interproscan
BP GO:0010048 vernalization response RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0016569 obsolete covalent chromatin modification RCA Interproscan
BP GO:0019915 lipid storage RCA Interproscan
BP GO:0030422 production of siRNA involved in RNA interference RCA Interproscan
BP GO:0031047 gene silencing by RNA RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IDA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IMP Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0048573 photoperiodism, flowering RCA Interproscan
BP GO:0048638 regulation of developmental growth IMP Interproscan
BP GO:0050826 response to freezing RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0002238 response to molecule of fungal origin IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0035061 interchromatin granule IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0045039 protein insertion into mitochondrial inner membrane IEP HCCA
BP GO:0051204 protein insertion into mitochondrial membrane IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP HCCA
InterPro domains Description Start Stop
IPR000253 FHA_dom 219 299
PLAZA 3.0 Dicots AT3G20550