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AT3G24230


Description : Pectate lyase family protein


Gene families : OG_01_0000806 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G24230
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT4G13710 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g01000.1 No alias pectate lyase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004126 cytidine deaminase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
BP GO:0006213 pyrimidine nucleoside metabolic process IEP HCCA
BP GO:0006216 cytidine catabolic process IEP HCCA
BP GO:0006885 regulation of pH IEP HCCA
BP GO:0007035 vacuolar acidification IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0008360 regulation of cell shape IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009972 cytidine deamination IEP HCCA
BP GO:0010023 proanthocyanidin biosynthetic process IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010052 guard cell differentiation IEP HCCA
BP GO:0010374 stomatal complex development IEP HCCA
BP GO:0010430 fatty acid omega-oxidation IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
BP GO:0016093 polyprenol metabolic process IEP HCCA
BP GO:0016094 polyprenol biosynthetic process IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0019348 dolichol metabolic process IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
BP GO:0019408 dolichol biosynthetic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP HCCA
BP GO:0030641 regulation of cellular pH IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
MF GO:0045547 dehydrodolichyl diphosphate synthase activity IEP HCCA
BP GO:0045851 pH reduction IEP HCCA
BP GO:0046087 cytidine metabolic process IEP HCCA
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP HCCA
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP HCCA
BP GO:0046135 pyrimidine nucleoside catabolic process IEP HCCA
MF GO:0046593 mandelonitrile lyase activity IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048445 carpel morphogenesis IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051452 intracellular pH reduction IEP HCCA
BP GO:0051453 regulation of intracellular pH IEP HCCA
BP GO:0055067 monovalent inorganic cation homeostasis IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0090558 plant epidermis development IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP HCCA
BP GO:2000029 regulation of proanthocyanidin biosynthetic process IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 188 369
PLAZA 3.0 Dicots AT3G24230