AT3G26900


Description : shikimate kinase like 1


Gene families : OG_01_0001564 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001564_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G26900
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Pp3c6_23100V3.1 No alias shikimate kinase 1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process RCA Interproscan
BP GO:0006520 cellular amino acid metabolic process RCA Interproscan
BP GO:0006546 glycine catabolic process RCA Interproscan
BP GO:0006569 tryptophan catabolic process RCA Interproscan
BP GO:0006636 unsaturated fatty acid biosynthetic process RCA Interproscan
BP GO:0006733 obsolete oxidoreduction coenzyme metabolic process RCA Interproscan
BP GO:0006766 vitamin metabolic process RCA Interproscan
BP GO:0008652 cellular amino acid biosynthetic process RCA Interproscan
BP GO:0009072 aromatic amino acid family metabolic process RCA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process RCA Interproscan
BP GO:0009073 aromatic amino acid family biosynthetic process TAS Interproscan
BP GO:0009106 lipoate metabolic process RCA Interproscan
BP GO:0009108 obsolete coenzyme biosynthetic process RCA Interproscan
BP GO:0009117 nucleotide metabolic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0009658 chloroplast organization IMP Interproscan
BP GO:0009684 indoleacetic acid biosynthetic process RCA Interproscan
BP GO:0009695 jasmonic acid biosynthetic process RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010027 thylakoid membrane organization IMP Interproscan
BP GO:0015995 chlorophyll biosynthetic process RCA Interproscan
BP GO:0016226 iron-sulfur cluster assembly RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0019748 secondary metabolic process RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0044272 sulfur compound biosynthetic process RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004081 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity IEP HCCA
MF GO:0004462 lactoylglutathione lyase activity IEP HCCA
MF GO:0004551 nucleotide diphosphatase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008300 isoprenoid catabolic process IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008796 bis(5'-nucleosyl)-tetraphosphatase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009533 chloroplast stromal thylakoid IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009543 chloroplast thylakoid lumen IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009691 cytokinin biosynthetic process IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
MF GO:0009977 proton motive force dependent protein transmembrane transporter activity IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010270 photosystem II oxygen evolving complex assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP HCCA
CC GO:0010319 stromule IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
CC GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016110 tetraterpenoid catabolic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016115 terpenoid catabolic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
BP GO:0016118 carotenoid catabolic process IEP HCCA
BP GO:0016119 carotene metabolic process IEP HCCA
BP GO:0016121 carotene catabolic process IEP HCCA
BP GO:0016122 xanthophyll metabolic process IEP HCCA
BP GO:0016124 xanthophyll catabolic process IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019685 photosynthesis, dark reaction IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030095 chloroplast photosystem II IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
CC GO:0031977 thylakoid lumen IEP HCCA
CC GO:0031978 plastid thylakoid lumen IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032268 regulation of cellular protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033281 TAT protein transport complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
MF GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of ion transmembrane transport IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042214 terpene metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043269 regulation of ion transport IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044257 cellular protein catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
MF GO:0045550 geranylgeranyl reductase activity IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0046247 terpene catabolic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090342 regulation of cell aging IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP HCCA
BP GO:0120253 hydrocarbon catabolic process IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1904062 regulation of cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR031322 Shikimate/glucono_kinase 100 263
PLAZA 3.0 Dicots AT3G26900