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  5. AT3G27360

AT3G27360


Description : Histone superfamily protein


Gene families : OG_01_0000031 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G27360
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT4G40030 No alias Histone superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g265500 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g710550 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g711850 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713550 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713950 No alias Chromatin organisation.histones.H3-type histone 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714650 No alias Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g07730.1 No alias histone (H3) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g09090.1 No alias histone (H3) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g10730.1 No alias histone (H3) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g16200.1 No alias histone (H3) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp7g18030.1 No alias histone (H3) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_14470V3.1 No alias Histone superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_14481V3.1 No alias Histone superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_20670V3.1 No alias Histone superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_8680V3.1 No alias Histone superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_15100V3.1 No alias Histone superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_11100V3.1 No alias Histone superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_13230V3.1 No alias Histone superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_37020V3.1 No alias Histone superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_2810V3.1 No alias Histone superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_03578.1 No alias histone (H3) 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13653.1 No alias histone (H3) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0001872 (1->3)-beta-D-glucan binding IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006279 premeiotic DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009934 regulation of meristem structural organization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016048 detection of temperature stimulus IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 histone phosphorylation IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0030332 cyclin binding IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033260 nuclear DNA replication IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046658 anchored component of plasma membrane IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
MF GO:0098772 molecular function regulator IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
PLAZA 3.0 Dicots AT3G27360