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Description : BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene families : OG_01_0001599 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001599_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G28280 | |
| Cluster | HCCA: Cluster_84 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G15680 | No alias | F-box family protein | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT1G49990 | No alias | F-box family protein | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G26010 | No alias | Galactose oxidase/kelch repeat superfamily protein | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G28330 | No alias | F-box family protein-related | 0.12 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G48220 | No alias | BEST Arabidopsis thaliana protein match is: F-box family... | 0.02 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT4G22430 | No alias | F-box family protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005575 | cellular_component | ND | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005680 | anaphase-promoting complex | IEP | HCCA |
| CC | GO:0005834 | heterotrimeric G-protein complex | IEP | HCCA |
| BP | GO:0010440 | stomatal lineage progression | IEP | HCCA |
| MF | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | IEP | HCCA |
| MF | GO:0019207 | kinase regulator activity | IEP | HCCA |
| MF | GO:0019887 | protein kinase regulator activity | IEP | HCCA |
| CC | GO:1905360 | GTPase complex | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT3G28280 |