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  5. AT3G28415

AT3G28415


Description : ABC transporter family protein


Gene families : OG_01_0000146 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G28415
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AT3G28345 No alias ABC transporter family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G28380 No alias P-glycoprotein 17 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01820 No alias P-glycoprotein 3 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0010315 auxin efflux IBA Interproscan
BP GO:0010540 basipetal auxin transport IBA Interproscan
BP GO:0010541 acropetal auxin transport IBA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0016021 integral component of membrane IBA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IBA Interproscan
BP GO:0055085 transmembrane transport IBA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000304 response to singlet oxygen IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018904 ether metabolic process IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
MF GO:0042349 guiding stereospecific synthesis activity IEP HCCA
BP GO:0045338 farnesyl diphosphate metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
MF GO:0080043 quercetin 3-O-glucosyltransferase activity IEP HCCA
BP GO:1901503 ether biosynthetic process IEP HCCA
BP GO:1901598 (-)-pinoresinol metabolic process IEP HCCA
BP GO:1901599 (-)-pinoresinol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 995 1145
IPR003439 ABC_transporter-like_ATP-bd 357 505
IPR011527 ABC1_TM_dom 655 923
IPR011527 ABC1_TM_dom 23 282
PLAZA 3.0 Dicots AT3G28415