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AT3G28640


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011689 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G28640
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT3G28660 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000182 rDNA binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
MF GO:0080084 5S rDNA binding IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 181 229
IPR002885 Pentatricopeptide_repeat 359 383
IPR002885 Pentatricopeptide_repeat 80 107
IPR002885 Pentatricopeptide_repeat 286 314
IPR002885 Pentatricopeptide_repeat 258 285
PLAZA 3.0 Dicots AT3G28640