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  5. AT3G45980

AT3G45980


Description : Histone superfamily protein


Gene families : OG_01_0000046 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45980
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT3G53650 No alias Histone superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g590750 No alias Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre13.g591200 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g714550 No alias Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g13450.1 No alias histone (H2B) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g04070.1 No alias histone (H2B) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g07010.1 No alias histone (H2B) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15750V3.1 No alias Histone superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12003.1 No alias histone (H2B) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0007020 microtubule nucleation RCA Interproscan
CC GO:0009534 chloroplast thylakoid IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0001872 (1->3)-beta-D-glucan binding IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
BP GO:0003156 regulation of animal organ formation IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005640 nuclear outer membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006279 premeiotic DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009411 response to UV IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010158 abaxial cell fate specification IEP HCCA
BP GO:0010160 formation of animal organ boundary IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010426 DNA methylation on cytosine within a CHH sequence IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016048 detection of temperature stimulus IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 histone phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018107 peptidyl-threonine phosphorylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018210 peptidyl-threonine modification IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022403 cell cycle phase IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0030332 cyclin binding IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
CC GO:0031965 nuclear membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032411 positive regulation of transporter activity IEP HCCA
BP GO:0032414 positive regulation of ion transmembrane transporter activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033260 nuclear DNA replication IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034764 positive regulation of transmembrane transport IEP HCCA
BP GO:0034767 positive regulation of ion transmembrane transport IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035173 histone kinase activity IEP HCCA
MF GO:0035184 histone threonine kinase activity IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
MF GO:0035402 histone kinase activity (H3-T11 specific) IEP HCCA
BP GO:0035405 histone-threonine phosphorylation IEP HCCA
BP GO:0035407 histone H3-T11 phosphorylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043270 positive regulation of ion transport IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0044848 biological phase IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0046658 anchored component of plasma membrane IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048504 regulation of timing of animal organ formation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051050 positive regulation of transport IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051325 interphase IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071588 hydrogen peroxide mediated signaling pathway IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0072354 histone kinase activity (H3-T3 specific) IEP HCCA
BP GO:0072355 histone H3-T3 phosphorylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement IEP HCCA
BP GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement IEP HCCA
BP GO:1901529 positive regulation of anion channel activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903793 positive regulation of anion transport IEP HCCA
BP GO:1903961 positive regulation of anion transmembrane transport IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000027 regulation of animal organ morphogenesis IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 126
PLAZA 3.0 Dicots AT3G45980