AT3G48990

Description : AMP-dependent synthetase and ligase family protein

Gene families : OG_01_0012129 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G48990
Cluster	HCCA: Cluster_395

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009072	aromatic amino acid family metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010030	positive regulation of seed germination	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010214	seed coat development	IMP	Interproscan
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transport	RCA	Interproscan
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016208	AMP binding	ISS	Interproscan
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033609	oxalate metabolic process	None	Extended
BP	GO:0033611	oxalate catabolic process	IDA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0043649	dicarboxylic acid catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046482	para-aminobenzoic acid metabolic process	RCA	Interproscan
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0050203	oxalate-CoA ligase activity	IDA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050832	defense response to fungus	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
BP	GO:0002218	activation of innate immune response	IEP	HCCA
BP	GO:0002220	innate immune response activating cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0002221	pattern recognition receptor signaling pathway	IEP	HCCA
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
BP	GO:0002253	activation of immune response	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0002429	immune response-activating cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0002684	positive regulation of immune system process	IEP	HCCA
BP	GO:0002752	cell surface pattern recognition receptor signaling pathway	IEP	HCCA
BP	GO:0002757	immune response-activating signal transduction	IEP	HCCA
BP	GO:0002758	innate immune response-activating signal transduction	IEP	HCCA
BP	GO:0002764	immune response-regulating signaling pathway	IEP	HCCA
BP	GO:0002768	immune response-regulating cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	HCCA
MF	GO:0003958	NADPH-hemoprotein reductase activity	IEP	HCCA
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	HCCA
MF	GO:0004352	glutamate dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004353	glutamate dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEP	HCCA
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	HCCA
MF	GO:0004448	isocitrate dehydrogenase activity	IEP	HCCA
MF	GO:0004449	isocitrate dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	HCCA
MF	GO:0005496	steroid binding	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006102	isocitrate metabolic process	IEP	HCCA
BP	GO:0006493	protein O-linked glycosylation	IEP	HCCA
BP	GO:0006563	L-serine metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006749	glutathione metabolic process	IEP	HCCA
BP	GO:0006954	inflammatory response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
MF	GO:0008142	oxysterol binding	IEP	HCCA
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009704	de-etiolation	IEP	HCCA
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	HCCA
BP	GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	IEP	HCCA
CC	GO:0009897	external side of plasma membrane	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0010959	regulation of metal ion transport	IEP	HCCA
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	HCCA
BP	GO:0015700	arsenite transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016508	long-chain-enoyl-CoA hydratase activity	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016639	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016653	oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0019208	phosphatase regulator activity	IEP	HCCA
MF	GO:0019212	phosphatase inhibitor activity	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
MF	GO:0019888	protein phosphatase regulator activity	IEP	HCCA
MF	GO:0030544	Hsp70 protein binding	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
CC	GO:0031306	intrinsic component of mitochondrial outer membrane	IEP	HCCA
CC	GO:0031307	integral component of mitochondrial outer membrane	IEP	HCCA
BP	GO:0032490	detection of molecule of bacterial origin	IEP	HCCA
BP	GO:0032491	detection of molecule of fungal origin	IEP	HCCA
BP	GO:0032494	response to peptidoglycan	IEP	HCCA
BP	GO:0032499	detection of peptidoglycan	IEP	HCCA
CC	GO:0032592	integral component of mitochondrial membrane	IEP	HCCA
MF	GO:0032934	sterol binding	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0042542	response to hydrogen peroxide	IEP	HCCA
BP	GO:0043270	positive regulation of ion transport	IEP	HCCA
MF	GO:0043295	glutathione binding	IEP	HCCA
BP	GO:0043434	response to peptide hormone	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045089	positive regulation of innate immune response	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0048358	mucilage pectin biosynthetic process	IEP	HCCA
BP	GO:0048363	mucilage pectin metabolic process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050778	positive regulation of immune response	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051050	positive regulation of transport	IEP	HCCA
BP	GO:0051924	regulation of calcium ion transport	IEP	HCCA
BP	GO:0051928	positive regulation of calcium ion transport	IEP	HCCA
MF	GO:0052622	ATP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0052623	ADP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	HCCA
BP	GO:0060416	response to growth hormone	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0071216	cellular response to biotic stimulus	IEP	HCCA
BP	GO:0071219	cellular response to molecule of bacterial origin	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071323	cellular response to chitin	IEP	HCCA
BP	GO:0071417	cellular response to organonitrogen compound	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0072341	modified amino acid binding	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080148	negative regulation of response to water deprivation	IEP	HCCA
BP	GO:0080163	regulation of protein serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0080170	hydrogen peroxide transmembrane transport	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:1900750	oligopeptide binding	IEP	HCCA
BP	GO:1901652	response to peptide	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1902652	secondary alcohol metabolic process	IEP	HCCA
BP	GO:2000070	regulation of response to water deprivation	IEP	HCCA
MF	GO:2001080	chitosan binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000873	AMP-dep_Synth/Lig	11	416
IPR025110	AMP-bd_C	425	500

External Links

PLAZA 3.0 Dicots	AT3G48990

AT3G48990

Expression Profile

Co-expression Networks

Functional Annotation